Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NMG48_RS07930 Genome accession   NZ_CP101416
Coordinates   1681937..1682962 (-) Length   341 a.a.
NCBI ID   WP_345961252.1    Uniprot ID   -
Organism   Pseudanabaena sp. Chao 1811     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1676937..1687962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG48_RS07915 - 1677056..1677919 (-) 864 WP_271254724.1 fatty acid desaturase -
  NMG48_RS07920 - 1678043..1679290 (+) 1248 WP_271254725.1 TetR family transcriptional regulator -
  NMG48_RS07925 - 1679689..1681836 (+) 2148 WP_271254726.1 IMS domain-containing protein -
  NMG48_RS07930 recA 1681937..1682962 (-) 1026 WP_345961252.1 recombinase RecA Machinery gene
  NMG48_RS07935 - 1683488..1684033 (+) 546 WP_271254727.1 NYN domain-containing protein -
  NMG48_RS07940 - 1684231..1684893 (-) 663 WP_271254728.1 LuxR C-terminal-related transcriptional regulator -
  NMG48_RS07945 - 1684988..1685422 (+) 435 WP_271254729.1 MAPEG family protein -
  NMG48_RS07950 - 1685571..1686308 (+) 738 WP_271254730.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36818.21 Da        Isoelectric Point: 5.1632

>NTDB_id=710079 NMG48_RS07930 WP_345961252.1 1681937..1682962(-) (recA) [Pseudanabaena sp. Chao 1811]
MQKIEKDHGKGSIMRLGDATNMRVETIPSGALPLDLALGGGLPKGRVIEVYGPESSGKTTLVLHAIAEVQKRGGVAAFVD
AEHALDPTYAASVGVDINNLLISQPDSGEMALEIVDNLVRSMAVDIIAIDSVAALVPRAEIEGEMGASHVGLQARLMSQA
LRKITANVGRSNCIVIFLNQLRQKIGVSYGSPETTTGGTALKFYASVRLDIRRIQTLKKGTEEYGIRAKVKVAKNKVAPP
FRIAEFDIIFGKGISTLGCLVDLAEEMSIIVRKGAWYSYQGDNIGQGRDNTIKYMEDKPEFAQEVERQVREKLSAGVAVS
ATKVVPEEIEPEDDDIPPDDF

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=710079 NMG48_RS07930 WP_345961252.1 1681937..1682962(-) (recA) [Pseudanabaena sp. Chao 1811]
ATGCAAAAGATCGAGAAGGATCACGGTAAAGGCTCGATCATGCGCTTGGGTGATGCGACGAACATGCGCGTTGAGACAAT
TCCTAGTGGCGCATTGCCCCTCGATCTTGCCCTTGGCGGTGGTTTGCCCAAAGGACGGGTGATCGAAGTATATGGACCTG
AAAGCTCTGGGAAAACGACATTAGTACTCCATGCGATCGCCGAAGTCCAAAAACGTGGTGGTGTGGCTGCCTTTGTGGAT
GCTGAACATGCCCTCGACCCTACCTATGCGGCAAGTGTTGGTGTCGATATTAATAACCTGCTGATTTCCCAGCCTGACTC
AGGGGAAATGGCATTAGAAATTGTTGATAATCTCGTGCGATCAATGGCTGTCGATATCATCGCGATCGACTCCGTTGCCG
CACTTGTACCCCGTGCTGAAATCGAAGGCGAAATGGGTGCTTCCCATGTCGGTTTGCAAGCCCGATTGATGAGCCAAGCA
TTGCGTAAAATCACAGCAAATGTAGGGCGATCGAACTGCATTGTCATTTTCCTAAATCAATTACGTCAAAAGATTGGCGT
ATCTTATGGTAGTCCTGAAACAACTACAGGCGGTACTGCCCTCAAGTTCTATGCCTCAGTGCGTCTCGATATTCGTCGTA
TCCAAACCCTCAAAAAAGGCACAGAAGAATATGGGATTCGTGCCAAGGTTAAGGTGGCTAAGAATAAAGTCGCTCCACCT
TTCCGTATTGCTGAATTCGACATCATCTTTGGTAAAGGCATTTCTACTCTCGGCTGTCTCGTTGATCTAGCCGAGGAAAT
GAGTATCATCGTCCGTAAGGGGGCATGGTATAGCTACCAAGGTGACAACATCGGTCAAGGTCGCGACAATACGATCAAGT
ACATGGAAGATAAGCCAGAATTTGCTCAGGAGGTTGAGCGACAAGTACGCGAAAAACTTTCCGCAGGTGTAGCCGTTTCA
GCGACCAAGGTTGTCCCTGAAGAAATTGAGCCTGAAGATGACGATATTCCCCCAGATGATTTCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(1-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.664

97.654

0.622
  recA Acinetobacter baylyi ADP1

65.605

92.082

0.604
  recA Ralstonia pseudosolanacearum GMI1000

62.5

96.188

0.601
  recA Pseudomonas stutzeri DSM 10701

60.534

98.827

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

57.681

100

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.317

94.428

0.56
  recA Glaesserella parasuis strain SC1401

60.443

92.669

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

60.256

91.496

0.551
  recA Neisseria gonorrhoeae MS11

60.323

90.909

0.548
  recA Neisseria gonorrhoeae MS11

60.323

90.909

0.548
  recA Neisseria gonorrhoeae strain FA1090

60.323

90.909

0.548
  recA Streptococcus pneumoniae TIGR4

58.621

93.548

0.548
  recA Streptococcus pneumoniae D39

58.621

93.548

0.548
  recA Streptococcus pneumoniae R6

58.621

93.548

0.548
  recA Streptococcus pneumoniae Rx1

58.621

93.548

0.548
  recA Helicobacter pylori strain NCTC11637

56.156

97.654

0.548
  recA Helicobacter pylori 26695

56.156

97.654

0.548
  recA Streptococcus mitis NCTC 12261

59.177

92.669

0.548
  recA Streptococcus mitis SK321

59.177

92.669

0.548
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.615

91.496

0.545
  recA Vibrio cholerae strain A1552

59.615

91.496

0.545
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.413

92.375

0.54
  recA Streptococcus mutans UA159

57.911

92.669

0.537
  recA Streptococcus pyogenes NZ131

57.233

93.255

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.289

93.255

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56.09

91.496

0.513