Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NLG07_RS11670 Genome accession   NZ_CP101291
Coordinates   2491005..2492033 (-) Length   342 a.a.
NCBI ID   WP_254855615.1    Uniprot ID   -
Organism   Alteromonas sp. LMIT006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2486005..2497033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLG07_RS11640 (NLG07_11640) - 2486137..2488143 (-) 2007 WP_254855609.1 heme lyase CcmF/NrfE family subunit -
  NLG07_RS11645 (NLG07_11645) ccmE 2488146..2488610 (-) 465 WP_254855610.1 cytochrome c maturation protein CcmE -
  NLG07_RS11650 (NLG07_11650) ccmD 2488612..2488815 (-) 204 WP_254855611.1 heme exporter protein CcmD -
  NLG07_RS11655 (NLG07_11655) - 2488815..2489561 (-) 747 WP_254855612.1 heme ABC transporter permease -
  NLG07_RS11660 (NLG07_11660) ccmB 2489561..2490226 (-) 666 WP_254855613.1 heme exporter protein CcmB -
  NLG07_RS11665 (NLG07_11665) ccmA 2490223..2490825 (-) 603 WP_254855614.1 cytochrome c biogenesis heme-transporting ATPase CcmA -
  NLG07_RS11670 (NLG07_11670) recA 2491005..2492033 (-) 1029 WP_254855615.1 recombinase RecA Machinery gene
  NLG07_RS11675 (NLG07_11675) - 2492232..2492729 (-) 498 WP_254855616.1 CinA family protein -
  NLG07_RS11680 (NLG07_11680) mutS 2492818..2495376 (+) 2559 WP_254856873.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36865.22 Da        Isoelectric Point: 4.8780

>NTDB_id=709528 NLG07_RS11670 WP_254855615.1 2491005..2492033(-) (recA) [Alteromonas sp. LMIT006]
MSDDNKARALSAALGQIEKQFGKGSIMKLGDNQAMDIESVSTGSLTIDIALGIGGLPCGRIVEIYGPESSGKTTLTLQVI
AEAQKVGKTCAFVDAEHALDPIYAEKLGVNIDELLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTANIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGN
ETRVKVVKNKVAPPFKQAEFQILYGQGISKEAELIDLGVQQKLVEKAGAWYSYNGNRIGQGKANVTRFLKENPAISAEIE
EKIRAELLCKAKPVEEETEDAE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=709528 NLG07_RS11670 WP_254855615.1 2491005..2492033(-) (recA) [Alteromonas sp. LMIT006]
ATGTCAGACGATAACAAAGCACGCGCCCTATCCGCCGCCCTAGGTCAGATTGAGAAGCAATTCGGCAAGGGTTCCATTAT
GAAGCTAGGTGACAACCAAGCGATGGACATTGAATCCGTCTCAACTGGTTCACTCACCATTGATATCGCATTAGGTATAG
GCGGCTTGCCTTGTGGTCGTATCGTTGAAATCTACGGCCCAGAGTCATCAGGTAAGACGACATTGACGTTGCAAGTTATT
GCTGAGGCACAGAAAGTGGGCAAAACGTGTGCCTTCGTGGATGCGGAACATGCTCTGGATCCCATCTATGCAGAGAAGCT
TGGCGTAAATATTGATGAGTTATTGGTATCACAGCCAGACACTGGGGAACAAGCATTAGAGATCACAGACATGCTCGTGC
GCTCTGGTGCAGTGGATGTGGTGATTGTGGACTCAGTTGCAGCGTTGACACCAAAAGCCGAAATTGAAGGTGACATGGGG
GATTCTCACGTCGGTCTTCAAGCTCGTTTAATGTCTCAAGCTTTGCGAAAACTGACGGCCAACATCAAGCGCTCAAATAC
ATTGTGTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACTACTGGCGGTAATG
CACTGAAATTCTATTCATCGGTTCGTTTAGATATTCGTCGCATTGGTGCTATTAAAGAAGGCGATGAAGTGGTTGGTAAC
GAAACTCGAGTCAAAGTGGTGAAGAACAAAGTAGCTCCGCCATTTAAGCAAGCTGAATTCCAAATTTTATATGGTCAAGG
GATCAGTAAAGAAGCCGAATTGATCGATTTAGGCGTCCAGCAGAAGTTGGTCGAAAAAGCGGGGGCATGGTATAGCTACA
ATGGTAACCGCATCGGTCAAGGTAAGGCCAACGTGACACGGTTCTTAAAAGAAAACCCAGCTATATCTGCTGAGATAGAA
GAGAAAATCCGCGCAGAGCTGTTGTGTAAGGCCAAGCCAGTTGAAGAAGAGACTGAAGACGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.391

100

0.781
  recA Vibrio cholerae strain A1552

78.221

95.322

0.746
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.221

95.322

0.746
  recA Acinetobacter baylyi ADP1

74.78

99.708

0.746
  recA Acinetobacter baumannii D1279779

73.529

99.415

0.731
  recA Neisseria gonorrhoeae MS11

74.54

95.322

0.711
  recA Neisseria gonorrhoeae MS11

74.54

95.322

0.711
  recA Neisseria gonorrhoeae strain FA1090

74.54

95.322

0.711
  recA Glaesserella parasuis strain SC1401

72.239

97.953

0.708
  recA Ralstonia pseudosolanacearum GMI1000

71.94

97.953

0.705
  recA Bacillus subtilis subsp. subtilis str. 168

68.21

94.737

0.646
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.724

95.322

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

97.661

0.614
  recA Helicobacter pylori 26695

63.777

94.444

0.602
  recA Helicobacter pylori strain NCTC11637

63.777

94.444

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

59.942

100

0.599
  recA Streptococcus mitis NCTC 12261

59.412

99.415

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

94.444

0.585
  recA Streptococcus pneumoniae Rx1

61.35

95.322

0.585
  recA Streptococcus pneumoniae R6

61.35

95.322

0.585
  recA Streptococcus pneumoniae TIGR4

61.35

95.322

0.585
  recA Streptococcus pneumoniae D39

61.35

95.322

0.585
  recA Streptococcus mutans UA159

61.162

95.614

0.585
  recA Streptococcus mitis SK321

61.043

95.322

0.582
  recA Streptococcus pyogenes NZ131

60.061

95.906

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.385

94.152

0.55