Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NL113_RS00560 Genome accession   NZ_CP101130
Coordinates   154064..155110 (-) Length   348 a.a.
NCBI ID   WP_006638099.1    Uniprot ID   M5P461
Organism   Bacillus sp. KRF7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 149064..160110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS00540 - 149755..150675 (-) 921 WP_006638096.1 dipeptidase -
  NL113_RS00545 spoVS 150777..151037 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  NL113_RS00550 - 151240..152037 (-) 798 WP_006638097.1 TIGR00282 family metallophosphoesterase -
  NL113_RS00555 rny 152125..153684 (-) 1560 WP_006638098.1 ribonuclease Y -
  NL113_RS00560 recA 154064..155110 (-) 1047 WP_006638099.1 recombinase RecA Machinery gene
  NL113_RS00565 cinA 155292..156542 (-) 1251 WP_006638100.1 competence/damage-inducible protein A Machinery gene
  NL113_RS00570 pgsA 156563..157144 (-) 582 WP_006638101.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NL113_RS00575 - 157206..158114 (-) 909 WP_006638102.1 RodZ family helix-turn-helix domain-containing protein -
  NL113_RS00580 - 158132..158923 (-) 792 WP_006638103.1 YmfK family protein -
  NL113_RS00585 - 159187..159444 (-) 258 WP_006638104.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37822.92 Da        Isoelectric Point: 4.7173

>NTDB_id=708928 NL113_RS00560 WP_006638099.1 154064..155110(-) (recA) [Bacillus sp. KRF7]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQDERLGQGRENAKQFLKENKDVLLMIQEQ
IREHYGLDDAGSQAPKGDDEEIQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=708928 NL113_RS00560 WP_006638099.1 154064..155110(-) (recA) [Bacillus sp. KRF7]
ATGAGTGATCGTCAGGCAGCCTTAGACATGGCGCTTAAACAAATAGAAAAACAGTTTGGTAAAGGTTCGATTATGAAACT
GGGCGAACAGACTGAAACAAGAATTTCAACTGTACCGAGCGGTTCTTTAGCGCTCGATGCAGCCCTCGGTGTGGGCGGAT
ATCCGCGCGGAAGGATTATTGAAGTATACGGTCCTGAAAGCTCTGGTAAAACGACGGTGGCTCTTCATGCGATTGCCGAA
GTTCAACAGCAGGGCGGACAGGCTGCGTTCATAGACGCCGAACACGCGCTGGACCCCGTTTACGCGCAAAAATTAGGTGT
CAACATTGACGAGCTGCTGCTGTCCCAGCCTGATACGGGAGAACAGGCGCTTGAAATTGCGGAAGCGCTTGTCAGAAGCG
GAGCCGTTGATATCGTTGTCATCGACTCGGTTGCTGCGCTCGTGCCGAAAGCGGAAATCGAAGGAGACATGGGAGATTCT
CATGTCGGCCTGCAGGCCAGACTGATGTCCCAGGCGCTGCGGAAGCTTTCCGGAGCCATCAATAAATCGAAAACCATCGC
GATCTTTATTAACCAGATCCGCGAAAAAGTCGGTGTAATGTTTGGTAATCCGGAGACGACTCCGGGCGGAAGGGCCTTGA
AGTTCTATTCTTCTGTGCGCCTTGAAGTGCGCCGAGCCGAACAGCTTAAACAAGGCAATGATGTCATGGGGAACAAGACG
AAAATTAAAGTCGTGAAAAACAAAGTGGCCCCTCCTTTCCGGACAGCCGAAGTGGACATTATGTACGGCGAAGGAATCTC
AAAAGAAGGGGAGATCATCGACCTTGGAACAGAGCTTGACATCGTGCAAAAAAGCGGTGCATGGTACTCCTACCAGGATG
AACGTCTTGGACAGGGCCGCGAAAATGCGAAGCAGTTCCTGAAAGAAAACAAAGACGTGCTTCTGATGATCCAGGAGCAG
ATCAGGGAGCATTATGGATTGGATGATGCCGGCAGTCAGGCTCCTAAAGGTGATGACGAAGAAATCCAGGAAGAACTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P461

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.073

95.115

0.914
  recA Latilactobacillus sakei subsp. sakei 23K

72.807

98.276

0.716
  recA Streptococcus mitis SK321

67.919

99.425

0.675
  recA Streptococcus mitis NCTC 12261

67.63

99.425

0.672
  recA Streptococcus pneumoniae Rx1

67.241

100

0.672
  recA Streptococcus pneumoniae D39

67.241

100

0.672
  recA Streptococcus pneumoniae R6

67.241

100

0.672
  recA Streptococcus pneumoniae TIGR4

67.241

100

0.672
  recA Streptococcus mutans UA159

68.693

94.54

0.649
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

67.169

95.402

0.641
  recA Helicobacter pylori 26695

62.682

98.563

0.618
  recA Helicobacter pylori strain NCTC11637

62.682

98.563

0.618
  recA Neisseria gonorrhoeae strain FA1090

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.701

0.606
  recA Ralstonia pseudosolanacearum GMI1000

66.352

91.379

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Acinetobacter baylyi ADP1

60.174

98.851

0.595
  recA Acinetobacter baumannii D1279779

60.767

97.414

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Pseudomonas stutzeri DSM 10701

60.355

97.126

0.586
  recA Glaesserella parasuis strain SC1401

63.323

91.667

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

92.816

0.566