Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NK667_RS21255 | Genome accession | NZ_CP101125 |
| Coordinates | 4839697..4840749 (-) | Length | 350 a.a. |
| NCBI ID | WP_007907270.1 | Uniprot ID | - |
| Organism | Pseudomonas nunensis strain In5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4835153..4879614 | 4839697..4840749 | within | 0 |
Gene organization within MGE regions
Location: 4835153..4879614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NK667_RS21225 (NK667_21225) | erdR | 4835153..4835803 (-) | 651 | WP_054047047.1 | response regulator transcription factor ErdR | - |
| NK667_RS21230 (NK667_21230) | - | 4836013..4836771 (-) | 759 | WP_054615969.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| NK667_RS21235 (NK667_21235) | - | 4836962..4837387 (+) | 426 | WP_054047051.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| NK667_RS21240 (NK667_21240) | - | 4837388..4837582 (-) | 195 | WP_054047053.1 | hypothetical protein | - |
| NK667_RS21245 (NK667_21245) | - | 4838051..4839169 (+) | 1119 | WP_054047055.1 | TIGR00730 family Rossman fold protein | - |
| NK667_RS21250 (NK667_21250) | recX | 4839221..4839688 (-) | 468 | WP_054047057.1 | recombination regulator RecX | - |
| NK667_RS21255 (NK667_21255) | recA | 4839697..4840749 (-) | 1053 | WP_007907270.1 | recombinase RecA | Machinery gene |
| NK667_RS21260 (NK667_21260) | - | 4840833..4841333 (-) | 501 | WP_054615970.1 | CinA family protein | - |
| NK667_RS21265 (NK667_21265) | - | 4841414..4841938 (-) | 525 | WP_054615971.1 | lysis system i-spanin subunit Rz | - |
| NK667_RS21270 (NK667_21270) | - | 4841935..4842360 (-) | 426 | WP_054615972.1 | cell wall hydrolase | - |
| NK667_RS21275 (NK667_21275) | - | 4842419..4843543 (-) | 1125 | WP_083471361.1 | acyltransferase family protein | - |
| NK667_RS21280 (NK667_21280) | - | 4843896..4844459 (-) | 564 | WP_054615974.1 | glycoside hydrolase family 19 protein | - |
| NK667_RS21285 (NK667_21285) | - | 4844463..4844855 (-) | 393 | WP_054615975.1 | phage tail assembly chaperone | - |
| NK667_RS21290 (NK667_21290) | - | 4844868..4846079 (-) | 1212 | WP_054615976.1 | hypothetical protein | - |
| NK667_RS21295 (NK667_21295) | - | 4846112..4846672 (-) | 561 | WP_054615977.1 | tail fiber assembly protein | - |
| NK667_RS21300 (NK667_21300) | - | 4846680..4847783 (-) | 1104 | WP_054615978.1 | hypothetical protein | - |
| NK667_RS21305 (NK667_21305) | - | 4847909..4848424 (-) | 516 | WP_054615979.1 | hypothetical protein | - |
| NK667_RS21310 (NK667_21310) | - | 4848421..4849572 (-) | 1152 | WP_054615980.1 | hypothetical protein | - |
| NK667_RS21315 (NK667_21315) | - | 4849584..4850183 (-) | 600 | WP_054615981.1 | YmfQ family protein | - |
| NK667_RS21320 (NK667_21320) | - | 4850171..4851214 (-) | 1044 | WP_054615982.1 | baseplate J/gp47 family protein | - |
| NK667_RS21325 (NK667_21325) | - | 4851204..4851602 (-) | 399 | WP_054047083.1 | phage GP46 family protein | - |
| NK667_RS21330 (NK667_21330) | - | 4851602..4852111 (-) | 510 | WP_054047085.1 | phage baseplate assembly protein V | - |
| NK667_RS21335 (NK667_21335) | - | 4852581..4853624 (-) | 1044 | WP_054615983.1 | phage baseplate assembly protein | - |
| NK667_RS21340 (NK667_21340) | - | 4853628..4854866 (-) | 1239 | WP_054615984.1 | DNA circularization protein | - |
| NK667_RS21345 (NK667_21345) | - | 4854853..4856658 (-) | 1806 | WP_054615985.1 | hypothetical protein | - |
| NK667_RS21350 (NK667_21350) | - | 4856789..4857085 (-) | 297 | WP_054047093.1 | phage tail assembly protein | - |
| NK667_RS21355 (NK667_21355) | - | 4857082..4857429 (-) | 348 | WP_054047095.1 | phage tail tube protein | - |
| NK667_RS21360 (NK667_21360) | - | 4857497..4858993 (-) | 1497 | WP_054047097.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| NK667_RS21365 (NK667_21365) | - | 4858993..4859175 (-) | 183 | WP_054615986.1 | DUF2635 domain-containing protein | - |
| NK667_RS21370 (NK667_21370) | - | 4859172..4859756 (-) | 585 | WP_054615987.1 | phage tail terminator protein | - |
| NK667_RS21375 (NK667_21375) | - | 4860051..4861079 (-) | 1029 | WP_054615988.1 | phage tail protein | - |
| NK667_RS21380 (NK667_21380) | - | 4861089..4861301 (-) | 213 | WP_054615989.1 | tail protein X | - |
| NK667_RS21385 (NK667_21385) | - | 4861294..4861677 (-) | 384 | WP_054615990.1 | phage tail protein | - |
| NK667_RS21390 (NK667_21390) | - | 4861677..4863752 (-) | 2076 | WP_054615991.1 | phage tail tape measure protein | - |
| NK667_RS21395 (NK667_21395) | - | 4863881..4864462 (-) | 582 | WP_054615992.1 | phage tail assembly protein | - |
| NK667_RS21400 (NK667_21400) | - | 4864650..4865156 (-) | 507 | WP_054047111.1 | phage major tail tube protein | - |
| NK667_RS21405 (NK667_21405) | - | 4865156..4866322 (-) | 1167 | WP_054047113.1 | phage tail protein | - |
| NK667_RS21410 (NK667_21410) | - | 4866325..4866507 (-) | 183 | WP_054615993.1 | hypothetical protein | - |
| NK667_RS21415 (NK667_21415) | - | 4866605..4867030 (-) | 426 | WP_054615994.1 | tail fiber assembly protein | - |
| NK667_RS21420 (NK667_21420) | - | 4867041..4868567 (-) | 1527 | WP_054615995.1 | phage tail protein | - |
| NK667_RS21425 (NK667_21425) | - | 4868568..4869203 (-) | 636 | WP_054615996.1 | phage tail protein I | - |
| NK667_RS21430 (NK667_21430) | - | 4869200..4870195 (-) | 996 | WP_054047120.1 | baseplate J/gp47 family protein | - |
| NK667_RS21435 (NK667_21435) | - | 4870192..4870524 (-) | 333 | WP_054047123.1 | phage baseplate protein | - |
| NK667_RS21440 (NK667_21440) | - | 4870535..4871146 (-) | 612 | WP_054047124.1 | phage baseplate assembly protein V | - |
| NK667_RS21445 (NK667_21445) | - | 4871150..4871662 (-) | 513 | WP_054615997.1 | hypothetical protein | - |
| NK667_RS21450 (NK667_21450) | - | 4871686..4872036 (-) | 351 | WP_054615998.1 | phage holin family protein | - |
| NK667_RS21455 (NK667_21455) | - | 4872118..4872699 (-) | 582 | WP_054615999.1 | DUF642 domain-containing protein | - |
| NK667_RS21460 (NK667_21460) | - | 4873207..4873941 (-) | 735 | WP_054616000.1 | LexA family transcriptional regulator | - |
| NK667_RS21465 (NK667_21465) | mutS | 4874149..4876716 (+) | 2568 | WP_177331464.1 | DNA mismatch repair protein MutS | - |
| NK667_RS21470 (NK667_21470) | fdxA | 4876859..4877182 (+) | 324 | WP_054047139.1 | ferredoxin FdxA | - |
| NK667_RS21475 (NK667_21475) | rpoS | 4877644..4878651 (-) | 1008 | WP_054047143.1 | RNA polymerase sigma factor RpoS | - |
| NK667_RS21480 (NK667_21480) | - | 4878757..4879614 (-) | 858 | WP_082356636.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37269.83 Da Isoelectric Point: 5.5328
>NTDB_id=708902 NK667_RS21255 WP_007907270.1 4839697..4840749(-) (recA) [Pseudomonas nunensis strain In5]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=708902 NK667_RS21255 WP_007907270.1 4839697..4840749(-) (recA) [Pseudomonas nunensis strain In5]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACACTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGCGAGCAGGCTCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTAGCCGCCTTGGTGCCAAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTTTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTTGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAATCCGGAAATCGCCGCGAAGCTCGAGAAG
CAACTGCGCGACAAGCTGCTGACTCCAGCACCGGACGTCAAAGCATCGCCAGTCAAAGAGACTGCTGATGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACACTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGCGAGCAGGCTCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTAGCCGCCTTGGTGCCAAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTTTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTTGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAATCCGGAAATCGCCGCGAAGCTCGAGAAG
CAACTGCGCGACAAGCTGCTGACTCCAGCACCGGACGTCAAAGCATCGCCAGTCAAAGAGACTGCTGATGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.