Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NGC85_RS10175 Genome accession   NZ_CP101115
Coordinates   2183293..2184336 (+) Length   347 a.a.
NCBI ID   WP_005053313.1    Uniprot ID   N9ECX1
Organism   Acinetobacter sp. Z1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178293..2189336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS10155 (NGC85_10155) - 2180366..2181094 (-) 729 WP_254730814.1 histidine phosphatase family protein -
  NGC85_RS10160 (NGC85_10160) - 2181149..2182006 (-) 858 WP_254730817.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NGC85_RS10165 (NGC85_10165) - 2182018..2182722 (+) 705 WP_254730820.1 HAD-IA family hydrolase -
  NGC85_RS10170 (NGC85_10170) - 2182706..2183134 (+) 429 WP_254730823.1 RNA-binding S4 domain-containing protein -
  NGC85_RS10175 (NGC85_10175) recA 2183293..2184336 (+) 1044 WP_005053313.1 recombinase RecA Machinery gene
  NGC85_RS10180 (NGC85_10180) - 2184379..2184858 (+) 480 WP_254730826.1 regulatory protein RecX -
  NGC85_RS10190 (NGC85_10190) - 2185291..2186142 (+) 852 WP_254730829.1 YbgF trimerization domain-containing protein -
  NGC85_RS10195 (NGC85_10195) - 2186206..2188077 (-) 1872 WP_254730832.1 SurA N-terminal domain-containing protein -
  NGC85_RS10200 (NGC85_10200) - 2188217..2188489 (-) 273 WP_004878739.1 HU family DNA-binding protein -
  NGC85_RS10205 (NGC85_10205) - 2188657..2189112 (-) 456 WP_254730835.1 phasin family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37721.21 Da        Isoelectric Point: 5.3155

>NTDB_id=708742 NGC85_RS10175 WP_005053313.1 2183293..2184336(+) (recA) [Acinetobacter sp. Z1]
MDDNKSKALQAALGQIEKQFGKNTVMRLGDNTVLAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPVMAQEIEK
VIREQLLTKNKNEAAQAEIEEPEYLES

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=708742 NGC85_RS10175 WP_005053313.1 2183293..2184336(+) (recA) [Acinetobacter sp. Z1]
ATGGATGATAATAAAAGCAAAGCGCTACAAGCTGCCTTAGGTCAGATTGAGAAGCAATTTGGTAAAAATACAGTAATGCG
CTTAGGCGACAATACAGTATTAGCTGTTGAAGCAGTTTCTACAGGTTCATTAACCCTAGATATTGCACTAGGAATTGGTG
GATTACCTAAAGGTCGTATTGTTGAGATTTACGGTCCTGAATCATCAGGTAAAACAACCATGACCTTACAAGCCATTGCG
CAATGTCAAAAGAATGGTGGTACATGTGCCTTTATCGATGCCGAACATGCTTTAGATCCTGAATACGCTCGTAAATTGGG
TGTTGATATTGATAATTTGCTCGTTTCCCAACCTGACCACGGTGAACAAGCTTTAGAAATTGCAGATATGCTGGTTCGCT
CAGGTGCAATTGATCTCATTGTTGTCGACTCCGTTGCTGCACTTACCCCAAAAGCCGAGATTGAAGGCGAAATGGGTGAC
TCACATATGGGTCTACAGGCACGTTTGATGAGTCAAGCATTGCGTAAAATCACAGGTAATGCAAAACGCTCAAATTGTAT
GGTGATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAGCCCAGAAACAACAACTGGCGGTAACGCAC
TCAAATTCTATGCTTCTGTTCGTTTGGATATTCGTCGTATTGGTGCAGTTAAAGAAGGCGATGAAATTACAGGTAACGAA
ACACGCGTTAAAGTTGTTAAAAACAAAATGGCACCTCCGTTCAAAGAAGCAGTCTTCCAAATTATGTATGGTAAAGGCAC
GAACCAATTAGGTGAACTTGTTGATTTAGCTGTTCAACAAGATATCGTCCAAAAAGCGGGTGCTTGGTATTCATATCAAG
GTAATAAAATTGGACAAGGTAAAAATAACGTGATTCGTCATTTTGAAGAGAATCCAGTGATGGCTCAAGAAATTGAAAAG
GTCATTCGTGAGCAGCTTCTCACCAAAAACAAAAATGAAGCAGCCCAGGCTGAAATTGAAGAGCCAGAGTATTTAGAAAG
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9ECX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.117

100

0.916
  recA Acinetobacter baumannii D1279779

91.329

99.712

0.911
  recA Pseudomonas stutzeri DSM 10701

73.607

98.271

0.723
  recA Vibrio cholerae strain A1552

74.924

94.236

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

94.236

0.706
  recA Glaesserella parasuis strain SC1401

69.851

96.542

0.674
  recA Neisseria gonorrhoeae MS11

69.444

93.372

0.648
  recA Neisseria gonorrhoeae MS11

69.444

93.372

0.648
  recA Neisseria gonorrhoeae strain FA1090

69.444

93.372

0.648
  recA Ralstonia pseudosolanacearum GMI1000

71.704

89.625

0.643
  recA Helicobacter pylori strain NCTC11637

62.682

98.847

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

96.254

0.617
  recA Helicobacter pylori 26695

62.099

98.847

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.236

0.608
  recA Streptococcus mitis NCTC 12261

58.382

99.712

0.582
  recA Streptococcus mutans UA159

58.551

99.424

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.127

90.778

0.582
  recA Streptococcus mitis SK321

58.213

100

0.582
  recA Streptococcus pneumoniae D39

59.118

97.983

0.579
  recA Streptococcus pneumoniae Rx1

59.118

97.983

0.579
  recA Streptococcus pneumoniae R6

59.118

97.983

0.579
  recA Streptococcus pneumoniae TIGR4

59.118

97.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.795

0.573
  recA Streptococcus pyogenes NZ131

60.923

93.66

0.571
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.084

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.507

0.553