Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NMD06_RS05225 Genome accession   NZ_CP101082
Coordinates   1102537..1103601 (+) Length   354 a.a.
NCBI ID   WP_016154166.1    Uniprot ID   R8WPE0
Organism   Citrobacter braakii strain OT129     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097537..1108601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD06_RS05195 (NMD06_05180) srlD 1097706..1098485 (-) 780 WP_114680932.1 sorbitol-6-phosphate dehydrogenase -
  NMD06_RS05200 (NMD06_05185) srlB 1098503..1098865 (-) 363 WP_016154171.1 PTS glucitol/sorbitol transporter subunit IIA -
  NMD06_RS05205 (NMD06_05190) - 1098879..1099850 (-) 972 WP_114680931.1 PTS glucitol/sorbitol transporter subunit IIB -
  NMD06_RS05210 (NMD06_05195) srlA 1099847..1100410 (-) 564 WP_114680930.1 PTS glucitol/sorbitol transporter subunit IIC -
  NMD06_RS05215 (NMD06_05200) mltB 1100675..1101754 (+) 1080 WP_114680929.1 lytic murein transglycosylase B -
  NMD06_RS05220 (NMD06_05205) pncC 1101947..1102444 (+) 498 WP_200109726.1 nicotinamide-nucleotide amidase -
  NMD06_RS05225 (NMD06_05210) recA 1102537..1103601 (+) 1065 WP_016154166.1 recombinase RecA Machinery gene
  NMD06_RS05230 (NMD06_05215) recX 1103671..1104171 (+) 501 WP_370604929.1 recombination regulator RecX -
  NMD06_RS05235 (NMD06_05220) alaS 1104300..1106927 (+) 2628 WP_370604930.1 alanine--tRNA ligase -
  NMD06_RS05240 (NMD06_05225) csrA 1107166..1107351 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38157.53 Da        Isoelectric Point: 4.8211

>NTDB_id=708550 NMD06_RS05225 WP_016154166.1 1102537..1103601(+) (recA) [Citrobacter braakii strain OT129]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKVRELLLNNPDSKPDFSVDDSGEDVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=708550 NMD06_RS05225 WP_016154166.1 1102537..1103601(+) (recA) [Citrobacter braakii strain OT129]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTTGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGCTGACCCTGCAGGTT
ATTGCTGCCGCACAGCGCGAAGGTAAAACCTGTGCGTTCATTGATGCGGAACACGCGCTGGATCCCGTCTATGCGCGCAA
GCTCGGCGTTGATATCGACAACCTGCTGTGTTCTCAACCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACACCGAAGGCAGAAATCGAAGGCGAGATT
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTACTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTATGCTTCTGTTCGCCTGGATATCCGCCGTATTGGCGCGGTGAAAGAAGGCGACAACGTGGTTGGT
AGCGAAACCCGTGTTAAGGTTGTGAAAAACAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATTCTTTACGGTGA
AGGTATCAACTTCTACGGCGAACTGGTTGATTTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAACGGTGAGAAAATTGGTCAGGGTAAAGCGAATGCCACTAACTGGCTGAAGGAAAACCCGGCAACTGCGAAGGAAATT
GAGAAGAAAGTACGCGAGTTACTGCTCAATAACCCGGATTCAAAACCAGACTTCTCTGTTGATGACAGCGGTGAAGATGT
AAAAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8WPE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.503

97.74

0.797
  recA Vibrio cholerae strain A1552

81.503

97.74

0.797
  recA Pseudomonas stutzeri DSM 10701

73.021

96.328

0.703
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baylyi ADP1

74.39

92.655

0.689
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.794

88.983

0.63
  recA Latilactobacillus sakei subsp. sakei 23K

58.146

100

0.585
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Lactococcus lactis subsp. cremoris KW2

63.158

91.243

0.576
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus mitis SK321

62.848

91.243

0.573
  recA Streptococcus mitis NCTC 12261

62.848

91.243

0.573
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus mutans UA159

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.678

0.554