Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NMD07_RS05845 Genome accession   NZ_CP101080
Coordinates   1223424..1224488 (+) Length   354 a.a.
NCBI ID   WP_042310549.1    Uniprot ID   A0A2Z3X499
Organism   Citrobacter cronae strain OT130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1218424..1229488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD07_RS05815 (NMD07_05820) srlD 1218591..1219370 (-) 780 WP_006687183.1 sorbitol-6-phosphate dehydrogenase -
  NMD07_RS05820 (NMD07_05825) srlB 1219388..1219750 (-) 363 WP_038633050.1 PTS glucitol/sorbitol transporter subunit IIA -
  NMD07_RS05825 (NMD07_05830) - 1219764..1220735 (-) 972 WP_085048874.1 PTS glucitol/sorbitol transporter subunit IIB -
  NMD07_RS05830 (NMD07_05835) srlA 1220732..1221295 (-) 564 WP_003825953.1 PTS glucitol/sorbitol transporter subunit IIC -
  NMD07_RS05835 (NMD07_05840) mltB 1221561..1222640 (+) 1080 WP_085048875.1 lytic murein transglycosylase B -
  NMD07_RS05840 (NMD07_05845) pncC 1222834..1223331 (+) 498 WP_085048876.1 nicotinamide-nucleotide amidase -
  NMD07_RS05845 (NMD07_05850) recA 1223424..1224488 (+) 1065 WP_042310549.1 recombinase RecA Machinery gene
  NMD07_RS05850 (NMD07_05855) recX 1224561..1225061 (+) 501 WP_085048877.1 recombination regulator RecX -
  NMD07_RS05855 (NMD07_05860) alaS 1225189..1227816 (+) 2628 WP_061382320.1 alanine--tRNA ligase -
  NMD07_RS05860 (NMD07_05865) csrA 1228055..1228240 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38030.34 Da        Isoelectric Point: 4.7417

>NTDB_id=708528 NMD07_RS05845 WP_042310549.1 1223424..1224488(+) (recA) [Citrobacter cronae strain OT130]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNNQDSTPDFSVDDGGADVAETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=708528 NMD07_RS05845 WP_042310549.1 1223424..1224488(+) (recA) [Citrobacter cronae strain OT130]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGACATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGCTGACGCTGCAGGTT
ATTGCCGCCGCTCAGCGCGAAGGTAAAACCTGTGCGTTCATTGATGCGGAACACGCGCTGGATCCCGTCTATGCCCGTAA
GCTTGGCGTTGATATCGACAACCTGCTGTGTTCCCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGCGAGATT
GGCGACTCTCACATGGGTCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTACTGATTTTCATCAACCAGATCCGTATGAAAATTGGCGTTATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTATGCCTCCGTGCGCCTGGACATTCGCCGTATCGGCGCAGTGAAAGAGGGCGACAACGTGGTTGGT
AGCGAAACCCGCGTTAAGGTCGTGAAAAACAAAATCGCCGCGCCGTTTAAACAGGCTGAATTCCAGATTCTGTATGGTGA
AGGTATCAACTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ATAACGGTGAGAAAATCGGTCAGGGTAAAGCGAATGCGACCAACTGGCTGAAAGAAAACCCGGCAACCGCAAAAGAGATT
GAGAAGAAATTGCGCGAGTTACTGCTCAATAACCAGGATTCAACGCCAGATTTCTCCGTTGATGACGGTGGTGCAGACGT
AGCAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3X499

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

93.503

0.794
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

93.503

0.794
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Acinetobacter baylyi ADP1

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.808

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551