Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PIC92_RS13450 Genome accession   NZ_CP116115
Coordinates   2697619..2698275 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain DETEC-P793     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2692619..2703275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC92_RS13420 (PIC92_13420) yecA 2693871..2694536 (-) 666 WP_000847877.1 UPF0149 family protein YecA -
  PIC92_RS13440 (PIC92_13440) pgsA 2695185..2695733 (-) 549 WP_001538881.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PIC92_RS13445 (PIC92_13445) uvrC 2695790..2697622 (-) 1833 WP_001773939.1 excinuclease ABC subunit UvrC Machinery gene
  PIC92_RS13450 (PIC92_13450) letA 2697619..2698275 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PIC92_RS13455 (PIC92_13455) yecU 2698571..2698747 (+) 177 WP_001307856.1 protein YecU -
  PIC92_RS13460 (PIC92_13460) yecF 2698734..2698958 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  PIC92_RS13465 (PIC92_13465) sdiA 2699026..2699748 (-) 723 WP_001154255.1 transcriptional regulator SdiA -
  PIC92_RS13470 (PIC92_13470) tcyN 2699978..2700730 (-) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  PIC92_RS13475 (PIC92_13475) tcyL 2700727..2701395 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  PIC92_RS13480 (PIC92_13480) dcyD 2701410..2702396 (-) 987 WP_001128237.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=708087 PIC92_RS13450 WP_000611328.1 2697619..2698275(-) (letA) [Escherichia coli strain DETEC-P793]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=708087 PIC92_RS13450 WP_000611328.1 2697619..2698275(-) (letA) [Escherichia coli strain DETEC-P793]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTTAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482