Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NL778_RS19470 Genome accession   NZ_CP100652
Coordinates   4286665..4287732 (-) Length   355 a.a.
NCBI ID   WP_012315850.1    Uniprot ID   -
Organism   Pseudomonas putida strain HSM-C2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4281665..4292732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL778_RS19430 (NL778_19430) - 4281909..4282271 (-) 363 WP_012315843.1 diacylglycerol kinase -
  NL778_RS19435 (NL778_19435) erdR 4282345..4282995 (-) 651 WP_012315844.1 response regulator transcription factor ErdR -
  NL778_RS19440 (NL778_19440) - 4283174..4283884 (-) 711 WP_254466319.1 tRNA-uridine aminocarboxypropyltransferase -
  NL778_RS19445 (NL778_19445) - 4283966..4284109 (-) 144 WP_190273315.1 hypothetical protein -
  NL778_RS19450 (NL778_19450) - 4284108..4284527 (+) 420 WP_254466320.1 quorum-sensing-regulated virulence factor family protein -
  NL778_RS19455 (NL778_19455) - 4284528..4284731 (-) 204 WP_012315847.1 hypothetical protein -
  NL778_RS19460 (NL778_19460) - 4285033..4286151 (+) 1119 WP_254466321.1 LOG family protein -
  NL778_RS19465 (NL778_19465) recX 4286177..4286647 (-) 471 WP_254466322.1 recombination regulator RecX -
  NL778_RS19470 (NL778_19470) recA 4286665..4287732 (-) 1068 WP_012315850.1 recombinase RecA Machinery gene
  NL778_RS19475 (NL778_19475) - 4287836..4288318 (-) 483 WP_012315851.1 CinA family protein -
  NL778_RS19480 (NL778_19480) - 4288425..4288760 (-) 336 WP_254466323.1 phage holin family protein -
  NL778_RS19485 (NL778_19485) - 4289062..4289808 (-) 747 WP_254467907.1 XRE family transcriptional regulator -
  NL778_RS19490 (NL778_19490) mutS 4289948..4292521 (+) 2574 WP_012315870.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37571.00 Da        Isoelectric Point: 5.8819

>NTDB_id=706060 NL778_RS19470 WP_012315850.1 4286665..4287732(-) (recA) [Pseudomonas putida strain HSM-C2]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERTGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLQENPAIGAEIEK
QIREKLLKAGVVAEAGKAAAADAKADDVADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=706060 NL778_RS19470 WP_012315850.1 4286665..4287732(-) (recA) [Pseudomonas putida strain HSM-C2]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGCGATCACGAGCGTACCGGCATTCCGGCCATTTCTACCGGCTCCCTGGGCCTGGACATCGCTCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTATGGCCCGGAGTCTTCGGGTAAAACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAGCGGCGCTACCTGCGCCTTCGTCGACGCCGAGCACGCTCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGATACCGGCGAGCAGGCACTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCCGTTGACGTAATCATCGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCAGAAATCGAAGGCGAGATGGGTGAC
ATGCACGTTGGCCTCCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGCCTGGATATACGTCGTACTGGTGCAGTCAAGGAAGGCGACGAAGTCGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGTAAGGGTAT
CTACCGTAACGGCGAAATCATTGACTTGGGTGTCTCCCAAGGGTTGGTCGAGAAGTCTGGTGCCTGGTATGCCTATCAGG
GCAACAAGATCGGCCAAGGCAAGGCTAACGCGGCCAAGTACCTGCAAGAGAACCCGGCCATTGGTGCCGAGATCGAGAAG
CAGATTCGTGAGAAGCTGCTCAAGGCGGGTGTTGTTGCCGAAGCAGGCAAGGCTGCTGCAGCTGATGCCAAAGCCGACGA
CGTGGCTGACGCCGACGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.205

99.155

0.885
  recA Acinetobacter baylyi ADP1

76.453

92.113

0.704
  recA Acinetobacter baumannii D1279779

74.924

93.239

0.699
  recA Vibrio cholerae strain A1552

72.222

96.338

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.222

96.338

0.696
  recA Glaesserella parasuis strain SC1401

69.143

98.592

0.682
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

70.988

91.268

0.648
  recA Neisseria gonorrhoeae MS11

70.988

91.268

0.648
  recA Neisseria gonorrhoeae strain FA1090

70.988

91.268

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.473

94.085

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

92.113

0.58
  recA Helicobacter pylori 26695

62.385

92.113

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.423

0.566
  recA Streptococcus pyogenes NZ131

55.182

100

0.555
  recA Streptococcus mutans UA159

55.211

100

0.552
  recA Streptococcus mitis SK321

55.241

99.437

0.549
  recA Streptococcus mitis NCTC 12261

56.268

96.62

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Streptococcus pneumoniae Rx1

58.282

91.831

0.535
  recA Streptococcus pneumoniae D39

58.282

91.831

0.535
  recA Streptococcus pneumoniae R6

58.282

91.831

0.535
  recA Streptococcus pneumoniae TIGR4

58.282

91.831

0.535
  recA Lactococcus lactis subsp. cremoris KW2

56.966

90.986

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

91.831

0.51