Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NJU99_RS14225 Genome accession   NZ_CP100595
Coordinates   3017295..3018329 (+) Length   344 a.a.
NCBI ID   WP_254576569.1    Uniprot ID   -
Organism   Arcobacter roscoffensis strain ARW1-2F2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3012295..3023329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJU99_RS14205 (NJU99_14205) - 3013265..3014695 (+) 1431 WP_254576565.1 PfkB family carbohydrate kinase -
  NJU99_RS14210 (NJU99_14210) - 3014688..3016199 (+) 1512 WP_254576566.1 radical SAM protein -
  NJU99_RS14215 (NJU99_14215) - 3016199..3016924 (+) 726 WP_254576567.1 nucleotidyltransferase family protein -
  NJU99_RS14220 (NJU99_14220) - 3016983..3017195 (+) 213 WP_254576568.1 hypothetical protein -
  NJU99_RS14225 (NJU99_14225) recA 3017295..3018329 (+) 1035 WP_254576569.1 recombinase RecA Machinery gene
  NJU99_RS14230 (NJU99_14230) eno 3018463..3019737 (+) 1275 WP_254576570.1 phosphopyruvate hydratase -
  NJU99_RS14235 (NJU99_14235) - 3019756..3019998 (+) 243 WP_254576571.1 septum formation initiator -
  NJU99_RS14240 (NJU99_14240) - 3019995..3020747 (+) 753 WP_254576572.1 AMIN domain-containing protein -
  NJU99_RS14245 (NJU99_14245) - 3020715..3021875 (-) 1161 WP_254576573.1 cation:proton antiporter -
  NJU99_RS14250 (NJU99_14250) - 3021906..3022787 (-) 882 WP_254576574.1 biotin synthase -
  NJU99_RS14255 (NJU99_14255) - 3022771..3023289 (-) 519 WP_254576575.1 YfcE family phosphodiesterase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37063.40 Da        Isoelectric Point: 4.6854

>NTDB_id=705849 NJU99_RS14225 WP_254576569.1 3017295..3018329(+) (recA) [Arcobacter roscoffensis strain ARW1-2F2]
MDDNQKKSLDLAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGIPKGRVVEIYGPESSGKTTLTLHAIA
ECQKAGGVCAFIDAEHALDTVYARNLGVDIDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGLLNKMNTTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQAENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQGKENSKVFLKDNPEIANEIE
KKILDAMGVNDEIIQGEAEEDTEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=705849 NJU99_RS14225 WP_254576569.1 3017295..3018329(+) (recA) [Arcobacter roscoffensis strain ARW1-2F2]
ATGGATGATAATCAAAAAAAATCTTTAGACTTAGCAATAAAACAAATTGATAAAGCATTTGGTAAAGGTACTTTAATTAG
ACTTGGGGATAAAGAGGTTATCCCAACTGAAGCCATTTCAACAGGTTCACTAGGACTTGATTTAGCACTTGGTGTTGGTG
GAATCCCAAAAGGTAGAGTTGTAGAAATCTATGGACCTGAGTCATCAGGTAAAACTACACTTACACTTCATGCTATAGCA
GAATGTCAAAAAGCAGGAGGAGTATGTGCATTTATTGATGCGGAGCATGCTTTAGATACTGTATATGCGAGAAACTTAGG
TGTTGATATTGATAATTTACTTGTATCTCAACCTGACTTTGGGGAACAAGCTTTAGAGATTTTAGAAACTGTTATTAGAT
CAGGAGCTGTTGATTTAGTTGTAGTTGACTCAGTTGCTGCACTTACTCCAAAAGTAGAAATTGATGGAGATATGGACGAC
CAACAAGTTGGTGTTCAAGCAAGACTTATGTCAAAAGCTCTTAGAAAAATTACTGGTTTATTAAACAAAATGAATACAAC
AGTAATTTTCATTAACCAAATTAGAATGAAGATTGGTATGACAGGTTACGGAAGTCCTGAAACTACTACAGGTGGAAATG
CTCTTAAATTTTACTCATCTGTAAGATTAGATATTAGAAGAATTGCTACACTTAAACAAGCTGAAAACTCAATTGGTAAT
AGAGTAAAAGTAAAAGTTGTTAAAAATAAAGTAGCAGCTCCATTTAAACAAGCAGAATTTGATATTATGTTTGGAGAGGG
AATTTCAAAAACTGGTGAGCTAGTGGATTACGGTGTAAAACTTGATATTGTAGATAAAGCAGGAGCTTGGTTCTCTTATG
GTGATTCTAAAATTGGTCAAGGTAAAGAAAACTCTAAAGTCTTCTTAAAAGACAATCCAGAAATTGCAAATGAAATTGAA
AAGAAAATTCTTGATGCAATGGGTGTAAATGATGAAATTATCCAGGGTGAAGCAGAAGAAGATACAGAAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.581

100

0.756
  recA Helicobacter pylori strain NCTC11637

75.749

97.093

0.735
  recA Helicobacter pylori 26695

75.449

97.093

0.733
  recA Acinetobacter baylyi ADP1

64.826

100

0.648
  recA Acinetobacter baumannii D1279779

64.058

100

0.642
  recA Neisseria gonorrhoeae MS11

64.516

99.128

0.64
  recA Neisseria gonorrhoeae strain FA1090

64.516

99.128

0.64
  recA Neisseria gonorrhoeae MS11

64.516

99.128

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

96.512

0.619
  recA Vibrio cholerae strain A1552

61.947

98.547

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.947

98.547

0.61
  recA Streptococcus mutans UA159

58.571

100

0.596
  recA Glaesserella parasuis strain SC1401

59.475

99.709

0.593
  recA Pseudomonas stutzeri DSM 10701

62.848

93.895

0.59
  recA Streptococcus pneumoniae D39

58.551

100

0.587
  recA Streptococcus pneumoniae Rx1

58.551

100

0.587
  recA Streptococcus pneumoniae R6

58.551

100

0.587
  recA Streptococcus pneumoniae TIGR4

58.551

100

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

61.027

96.221

0.587
  recA Ralstonia pseudosolanacearum GMI1000

63.492

91.57

0.581
  recA Streptococcus mitis SK321

57.771

99.128

0.573
  recA Streptococcus mitis NCTC 12261

59.215

96.221

0.57
  recA Streptococcus pyogenes NZ131

60.308

94.477

0.57
  recA Lactococcus lactis subsp. cremoris KW2

58.485

95.93

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

58.359

95.64

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

94.186

0.552