Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L4174_RS02750 Genome accession   NZ_CP100425
Coordinates   591471..592538 (+) Length   355 a.a.
NCBI ID   WP_248144060.1    Uniprot ID   -
Organism   Photobacterium sp. CCB-ST2H9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586471..597538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS02735 (L4174_002735) rpoS 587048..588049 (+) 1002 WP_248144057.1 RNA polymerase sigma factor RpoS -
  L4174_RS02740 (L4174_002740) mutS 588130..590667 (-) 2538 WP_371929391.1 DNA mismatch repair protein MutS -
  L4174_RS02745 (L4174_002745) pncC 590853..591341 (+) 489 WP_248144059.1 nicotinamide-nucleotide amidase -
  L4174_RS02750 (L4174_002750) recA 591471..592538 (+) 1068 WP_248144060.1 recombinase RecA Machinery gene
  L4174_RS02755 (L4174_002755) recX 592704..593165 (+) 462 WP_248144061.1 recombination regulator RecX -
  L4174_RS02760 (L4174_002760) alaS 593331..595955 (+) 2625 WP_248144062.1 alanine--tRNA ligase -
  L4174_RS02765 (L4174_002765) csrA 596277..596474 (+) 198 WP_027253546.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38186.53 Da        Isoelectric Point: 4.7937

>NTDB_id=705116 L4174_RS02750 WP_248144060.1 591471..592538(+) (recA) [Photobacterium sp. CCB-ST2H9]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIA
AAQRKGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKVAAPFKQADTQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSYQGDKIGQGKANACKYLAENPEIAQVIDK
QLREQLLNPANLADEAGEPTSAEAEDFEAQQDDAF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=705116 L4174_RS02750 WP_248144060.1 591471..592538(+) (recA) [Photobacterium sp. CCB-ST2H9]
ATGGACGACAACAAACAGAAGGCTCTTGCCGCTGCCCTGGGTCAGATCGAAAAGCAGTTCGGTAAAGGCTCCATCATGAA
GCTGGGTGACAACCGTACGATGGATATTGAAACCATCTCGACCGGTTCTCTGTCACTGGATATCGCACTGGGCGCGGGCG
GCCTGCCAATGGGTCGTATCGTTGAAATCTATGGTCCGGAATCTTCGGGTAAAACAACGCTGACGCTGGAAACAATTGCA
GCGGCACAGCGTAAAGGAAAGACTTGTGCCTTCATTGATGCCGAGCACGCACTGGATCCGATCTATGCGAAGAAGCTGGG
CGTGAACATCGATGAGCTGCTGGTTTCTCAGCCAGATACCGGTGAGCAGGCGCTGGAAATCTGTGATGCATTGGCCCGTT
CCGGTGCGGTCGATCTGATTGTTGTTGACTCCGTGGCTGCACTGACGCCGAAAGCTGAAATTGAAGGCGAAATGGGCGAC
TCTCACATGGGTTTGCAGGCGCGTATGCTGTCTCAGGCAATGCGTAAGCTGACGGGTAATCTGAAGCAGTCAAACTGTAT
GTGTATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTTCGGTAACCCGGAAACCACAACTGGTGGTAACGCCC
TGAAATTCTATGCTTCTGTTCGTCTGGATATTCGCCGTACCGGCGCCATTAAAGAAGGCGACGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAATAAAGTGGCTGCGCCGTTCAAGCAAGCGGATACACAAATTCTGTACGGACAGGGCTT
CAACCGCAATGGCGAGCTGATTGACCTGGGTGTGAAGCAGAAATTGATCGAAAAAGCCGGTGCCTGGTACAGCTATCAGG
GTGATAAGATTGGTCAGGGTAAAGCCAATGCTTGTAAGTACCTGGCGGAGAATCCGGAAATCGCTCAAGTTATTGACAAG
CAATTGCGTGAGCAACTGCTGAACCCGGCGAATCTGGCTGATGAGGCGGGTGAACCGACCAGTGCTGAGGCGGAAGATTT
TGAAGCGCAGCAGGACGATGCGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.08

98.028

0.873
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.08

98.028

0.873
  recA Pseudomonas stutzeri DSM 10701

77.982

92.113

0.718
  recA Acinetobacter baylyi ADP1

71.92

98.31

0.707
  recA Acinetobacter baumannii D1279779

74.924

92.113

0.69
  recA Glaesserella parasuis strain SC1401

69.075

97.465

0.673
  recA Neisseria gonorrhoeae MS11

70.062

91.268

0.639
  recA Neisseria gonorrhoeae MS11

70.062

91.268

0.639
  recA Neisseria gonorrhoeae strain FA1090

70.062

91.268

0.639
  recA Ralstonia pseudosolanacearum GMI1000

69.113

92.113

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

92.113

0.589
  recA Streptococcus pneumoniae Rx1

63.497

91.831

0.583
  recA Streptococcus pneumoniae TIGR4

63.497

91.831

0.583
  recA Streptococcus pneumoniae R6

63.497

91.831

0.583
  recA Streptococcus pneumoniae D39

63.497

91.831

0.583
  recA Streptococcus mitis NCTC 12261

63.19

91.831

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

63.665

90.704

0.577
  recA Streptococcus mitis SK321

62.883

91.831

0.577
  recA Streptococcus mutans UA159

62.385

92.113

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Streptococcus pyogenes NZ131

61.538

91.549

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.175

88.732

0.561
  recA Helicobacter pylori strain NCTC11637

60.55

92.113

0.558
  recA Helicobacter pylori 26695

60.245

92.113

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.423

0.549
  recA Lactococcus lactis subsp. cremoris KW2

60.062

90.986

0.546