Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   PF364_RS17235 Genome accession   NZ_CP115621
Coordinates   3583004..3583567 (-) Length   187 a.a.
NCBI ID   WP_031961383.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3578004..3588567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF364_RS17200 (PF364_17200) - 3578110..3579144 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  PF364_RS17205 (PF364_17205) - 3579259..3580200 (+) 942 WP_104131029.1 triacylglycerol lipase -
  PF364_RS17210 (PF364_17210) rplS 3580254..3580622 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  PF364_RS17215 (PF364_17215) trmD 3580830..3581570 (-) 741 WP_031961379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PF364_RS17220 (PF364_17220) rimM 3581616..3582164 (-) 549 WP_031961380.1 ribosome maturation factor RimM -
  PF364_RS17225 (PF364_17225) rpsP 3582184..3582435 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  PF364_RS17230 (PF364_17230) pilE 3582582..3583004 (-) 423 WP_031961381.1 type IV pilin protein Machinery gene
  PF364_RS17235 (PF364_17235) comE 3583004..3583567 (-) 564 WP_031961383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PF364_RS17240 (PF364_17240) - 3583577..3587647 (-) 4071 WP_031961384.1 PilC/PilY family type IV pilus protein -
  PF364_RS17245 (PF364_17245) - 3587673..3588362 (-) 690 WP_079281925.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20604.52 Da        Isoelectric Point: 8.3938

>NTDB_id=705116 PF364_RS17235 WP_031961383.1 3583004..3583567(-) (comE) [Acinetobacter baumannii strain 2022CK-00480]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW

Nucleotide


Download         Length: 564 bp        

>NTDB_id=705116 PF364_RS17235 WP_031961383.1 3583004..3583567(-) (comE) [Acinetobacter baumannii strain 2022CK-00480]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.85

100

0.439