Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NFC98_RS02520 Genome accession   NZ_CP100360
Coordinates   516751..517812 (+) Length   353 a.a.
NCBI ID   WP_183330776.1    Uniprot ID   -
Organism   Halomonas sp. 3H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 511751..522812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC98_RS02505 fdxA 512961..513284 (-) 324 WP_102627034.1 ferredoxin FdxA -
  NFC98_RS02510 mutS 513440..516013 (-) 2574 WP_254276604.1 DNA mismatch repair protein MutS -
  NFC98_RS02515 - 516120..516632 (+) 513 WP_254276605.1 CinA family protein -
  NFC98_RS02520 recA 516751..517812 (+) 1062 WP_183330776.1 recombinase RecA Machinery gene
  NFC98_RS02525 - 517816..518319 (+) 504 WP_254276606.1 regulatory protein RecX -
  NFC98_RS02530 alaS 518430..521042 (+) 2613 WP_254276607.1 alanine--tRNA ligase -
  NFC98_RS02535 - 521148..522398 (+) 1251 WP_254276608.1 aspartate kinase -
  NFC98_RS02540 csrA 522611..522808 (+) 198 WP_183330780.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37739.01 Da        Isoelectric Point: 4.9128

>NTDB_id=704748 NFC98_RS02520 WP_183330776.1 516751..517812(+) (recA) [Halomonas sp. 3H]
MAQDDNRSKALSAALSQIERQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPFGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHIKNANCLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCNLVDKAGAWYSYQGNKIGQGKANAAQFLEDNPAIMEEI
ESQIRAQLLAAPAPKEEAEEAVPAGSDREDDLL

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=704748 NFC98_RS02520 WP_183330776.1 516751..517812(+) (recA) [Halomonas sp. 3H]
ATGGCTCAGGACGACAACCGCTCCAAGGCGCTGAGCGCCGCGCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGCACCGT
GATGCGCCTCGGCGATGCGCCGCGGGTGGTCATGCCCTCGGTCTCCACCGGCTCGCTGGGGCTCGACATCGCGCTGGGCA
TCGGCGGCCTGCCCTTCGGCCGGGTGGTCGAGATCTTCGGCCCGGAGTCCTCGGGCAAGACGACGCTGACCCTGTCGGTG
ATCGCCCAGGCCCAGAAGCAGGGCAAGACCTGCGCCTTCATCGACGCCGAGCATGCCCTGGATCCCAGCTACGCCGAGAA
GCTCGGCGTCAACCTCGACGACCTGCTGGTCTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTGATCATCATCGACTCGGTGGCGGCGCTGACGCCCCGGGCCGAGATCGAGGGCGAGATG
GGCGATTCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCCACATCAAGAACGCCAA
CTGCCTGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAGACCACCACCGGCGGCA
ACGCCTTGAAGTTCTACTCCAGCGTGCGCCTGGACATCCGCCGCACCGGCTCGGTCAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGCATCTACCACGCCGGCGAGGTGATCGACCTGGGCGTGCAGTGCAACCTGGTCGACAAGGCGGGCGCCTGGTACAGCT
ACCAGGGCAACAAGATCGGACAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCCATCATGGAAGAGATC
GAGAGCCAGATCCGCGCCCAGCTGCTCGCCGCCCCGGCCCCGAAGGAGGAGGCCGAGGAAGCGGTCCCCGCCGGGAGCGA
CCGCGAGGACGATCTGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.674

98.3

0.773
  recA Acinetobacter baylyi ADP1

73.143

99.15

0.725
  recA Acinetobacter baumannii D1279779

75.46

92.351

0.697
  recA Glaesserella parasuis strain SC1401

71.037

92.918

0.66
  recA Neisseria gonorrhoeae MS11

72.136

91.501

0.66
  recA Neisseria gonorrhoeae MS11

72.136

91.501

0.66
  recA Neisseria gonorrhoeae strain FA1090

72.136

91.501

0.66
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.472

92.351

0.66
  recA Vibrio cholerae strain A1552

71.472

92.351

0.66
  recA Ralstonia pseudosolanacearum GMI1000

72.063

89.235

0.643
  recA Helicobacter pylori 26695

60.87

97.734

0.595
  recA Helicobacter pylori strain NCTC11637

60.29

97.734

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.351

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.607

95.184

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

63.438

90.652

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

56.941

100

0.569
  recA Streptococcus mutans UA159

59.327

92.635

0.55
  recA Streptococcus mitis NCTC 12261

58.589

92.351

0.541
  recA Streptococcus pyogenes NZ131

57.927

92.918

0.538
  recA Streptococcus mitis SK321

58.282

92.351

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

92.351

0.535
  recA Streptococcus pneumoniae D39

57.362

92.351

0.53
  recA Streptococcus pneumoniae R6

57.362

92.351

0.53
  recA Streptococcus pneumoniae TIGR4

57.362

92.351

0.53
  recA Streptococcus pneumoniae Rx1

57.362

92.351

0.53
  recA Lactococcus lactis subsp. cremoris KW2

56.481

91.785

0.518