Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NHM04_RS17010 Genome accession   NZ_CP100350
Coordinates   3886962..3887987 (+) Length   341 a.a.
NCBI ID   WP_254264946.1    Uniprot ID   A0A9J7A8J0
Organism   Gilvimarinus sp. DA14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3881962..3892987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS17000 (NHM04_17000) - 3884008..3886191 (+) 2184 WP_254264944.1 FdhF/YdeP family oxidoreductase -
  NHM04_RS17005 (NHM04_17005) - 3886294..3886797 (+) 504 WP_254264945.1 CinA family protein -
  NHM04_RS17010 (NHM04_17010) recA 3886962..3887987 (+) 1026 WP_254264946.1 recombinase RecA Machinery gene
  NHM04_RS17015 (NHM04_17015) - 3888002..3888457 (+) 456 WP_254264947.1 regulatory protein RecX -
  NHM04_RS17020 (NHM04_17020) rrtA 3888442..3889047 (-) 606 WP_254264948.1 rhombosortase -
  NHM04_RS17025 (NHM04_17025) - 3889244..3890359 (+) 1116 WP_254264949.1 phosphoserine transaminase -
  NHM04_RS17030 (NHM04_17030) - 3890433..3891608 (+) 1176 WP_254264950.1 phosphoglycerate dehydrogenase -
  NHM04_RS17035 (NHM04_17035) - 3891687..3891998 (+) 312 WP_254264951.1 NGG1p interacting factor NIF3 -
  NHM04_RS17040 (NHM04_17040) - 3891991..3892554 (+) 564 WP_254264952.1 CoA pyrophosphatase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36681.96 Da        Isoelectric Point: 5.0396

>NTDB_id=704713 NHM04_RS17010 WP_254264946.1 3886962..3887987(+) (recA) [Gilvimarinus sp. DA14]
MDANKEKALQAALGQIERQFGKGTVMRMGDREHVAIPAISTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLQVIA
EAQRAGGNCAFIDAEHALDPIYAEKLGVNVDDLIISQPDTGEQALEVSDMLVRSGAVDVLVVDSVAALTPKAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVIGSE
TRVKVVKNKVAPPFKQTEFQILYGQGINRMGEVIDYGVKLGMVDKAGAWYSYNGDKIGQGKNNVMKFLQENPDIATELES
RVRGELLGTVKPAEATEEEEA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=704713 NHM04_RS17010 WP_254264946.1 3886962..3887987(+) (recA) [Gilvimarinus sp. DA14]
ATGGACGCGAATAAAGAAAAGGCTTTGCAGGCAGCACTGGGTCAAATTGAGCGCCAGTTCGGTAAGGGTACCGTAATGCG
CATGGGCGATCGCGAACATGTCGCCATTCCCGCTATTTCCACAGGTTCGCTGGGGTTGGACGTTGCCCTGGGTATTGGCG
GCTTGCCCAAAGGCCGTATTGTTGAAATCTACGGGCCGGAGTCGTCCGGTAAAACCACTTTAACTTTGCAAGTGATCGCC
GAGGCCCAGCGCGCTGGTGGTAACTGTGCCTTTATCGATGCCGAGCACGCGCTAGACCCTATCTACGCCGAAAAGCTGGG
CGTAAATGTCGACGATTTGATCATCTCGCAACCGGATACCGGAGAGCAGGCGCTGGAAGTATCCGACATGCTGGTGCGCT
CGGGCGCGGTCGACGTGCTGGTAGTGGACTCGGTAGCAGCGCTGACCCCCAAGGCCGAAATTGAAGGTGAAATGGGCGAT
CATCACGTGGGCTTGCAGGCGCGTTTGATGTCGCAAGCACTGCGTAAAATTACCGGTAATATTAAAAATGCCAACTGTCT
GGTTATCTTTATTAACCAGATCCGGATGAAAATTGGCGTTATGTTCGGTAATCCCGAAACCACCACCGGCGGTAACGCAC
TTAAGTTTTACTCATCTGTACGCTTGGATATTCGCCGTATCGGTTCGGTGAAAGAGGGCGATGAAGTGATCGGCTCGGAA
ACCCGGGTGAAGGTGGTAAAAAACAAAGTGGCGCCCCCCTTTAAACAAACCGAATTCCAGATCTTGTACGGCCAGGGTAT
CAACCGCATGGGCGAGGTAATCGACTATGGGGTTAAGTTGGGCATGGTCGACAAAGCCGGTGCTTGGTACAGCTACAATG
GCGATAAAATCGGTCAGGGCAAAAACAACGTTATGAAGTTTTTGCAGGAAAACCCGGATATCGCTACCGAGCTGGAAAGC
CGGGTACGCGGTGAGCTTTTGGGCACAGTAAAACCTGCTGAAGCCACCGAGGAAGAAGAGGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.464

98.534

0.783
  recA Acinetobacter baylyi ADP1

74.336

99.413

0.739
  recA Acinetobacter baumannii D1279779

73.392

100

0.736
  recA Vibrio cholerae strain A1552

74.006

95.894

0.71
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

95.894

0.71
  recA Ralstonia pseudosolanacearum GMI1000

71.646

96.188

0.689
  recA Glaesserella parasuis strain SC1401

72.671

94.428

0.686
  recA Neisseria gonorrhoeae MS11

70.37

95.015

0.669
  recA Neisseria gonorrhoeae strain FA1090

70.37

95.015

0.669
  recA Neisseria gonorrhoeae MS11

70.37

95.015

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.723

100

0.651
  recA Helicobacter pylori strain NCTC11637

60.983

100

0.619
  recA Helicobacter pylori 26695

60.983

100

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

96.774

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

94.135

0.584
  recA Streptococcus mutans UA159

60.681

94.721

0.575
  recA Streptococcus pneumoniae D39

57.185

100

0.572
  recA Streptococcus pneumoniae TIGR4

57.185

100

0.572
  recA Streptococcus pneumoniae Rx1

57.185

100

0.572
  recA Streptococcus pneumoniae R6

57.185

100

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

60.815

93.548

0.569
  recA Streptococcus mitis SK321

57.227

99.413

0.569
  recA Streptococcus mitis NCTC 12261

58.769

95.308

0.56
  recA Streptococcus pyogenes NZ131

58.824

94.721

0.557
  recA Lactococcus lactis subsp. cremoris KW2

56

95.308

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.053

93.548

0.534