Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NKZ65_RS00390 Genome accession   NZ_CP100332
Coordinates   68545..69696 (+) Length   383 a.a.
NCBI ID   WP_024387809.1    Uniprot ID   -
Organism   Streptococcus suis strain STC84     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63545..74696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ65_RS00375 (NKZ65_00375) ruvA 65486..66076 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA -
  NKZ65_RS00380 (NKZ65_00380) - 66706..67275 (+) 570 WP_024417855.1 DNA-3-methyladenine glycosylase I -
  NKZ65_RS00385 (NKZ65_00385) cinA 67312..68493 (+) 1182 WP_024403265.1 competence/damage-inducible protein A Machinery gene
  NKZ65_RS00390 (NKZ65_00390) recA 68545..69696 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  NKZ65_RS00395 (NKZ65_00395) spx 69932..70330 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  NKZ65_RS00400 (NKZ65_00400) - 70430..70696 (+) 267 WP_024403264.1 IreB family regulatory phosphoprotein -
  NKZ65_RS00405 (NKZ65_00405) ruvX 70696..71115 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  NKZ65_RS00410 (NKZ65_00410) - 71127..71447 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  NKZ65_RS00415 (NKZ65_00415) - 71605..72173 (+) 569 Protein_62 nucleotidyltransferase family protein -
  NKZ65_RS00420 (NKZ65_00420) comX/sigX 72247..72513 (+) 267 WP_204101662.1 transcriptional regulator Regulator
  NKZ65_RS00425 (NKZ65_00425) rpsJ 72836..73144 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  NKZ65_RS00430 (NKZ65_00430) rplC 73357..73983 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  NKZ65_RS00435 (NKZ65_00435) rplD 74008..74631 (+) 624 WP_004195490.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40904.65 Da        Isoelectric Point: 4.8910

>NTDB_id=704415 NKZ65_RS00390 WP_024387809.1 68545..69696(+) (recA) [Streptococcus suis strain STC84]
MAKKPTKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=704415 NKZ65_RS00390 WP_024387809.1 68545..69696(+) (recA) [Streptococcus suis strain STC84]
TTGGCTAAGAAACCAACTAAGAAATTAGAAGATATTACAAAGAAATTTGGCGATGAACGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGTGCTGTTATGCGTCTTGGTGAGCGTGCTGAACAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATTGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTCTTGTCCCAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGATTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGATGGCGATATTGGTGATAGTCATGTTGGTTTGCAGGCTCGCATGATGAGTCA
GGCCATGCGCAAACTCGGTGCATCCATCAACAAAACAAAAACAGTAGCTATTTTCATTAACCAATTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACCCCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTTCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATCGTGAAGAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGTCAAGGTTCT
GAAAATGCTAAGAAATTCTTGGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGATT
GATTGAAGCAGATGGAGTTGAAGAAGTTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Glaesserella parasuis strain SC1401

59.118

88.773

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.944

89.034

0.525
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499
  recA Helicobacter pylori 26695

57.879

86.162

0.499