Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NKT35_RS23695 Genome accession   NZ_CP100128
Coordinates   5052028..5053083 (+) Length   351 a.a.
NCBI ID   WP_254297719.1    Uniprot ID   -
Organism   Chromobacterium sp. IIBBL 290-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5047028..5058083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKT35_RS23675 (NKT35_23675) - 5047403..5047729 (-) 327 WP_254297715.1 YbaB/EbfC family nucleoid-associated protein -
  NKT35_RS23680 (NKT35_23680) dnaX 5047735..5049675 (-) 1941 WP_254297716.1 DNA polymerase III subunit gamma/tau -
  NKT35_RS23685 (NKT35_23685) mltB 5049770..5050813 (-) 1044 WP_254297717.1 lytic murein transglycosylase B -
  NKT35_RS23690 (NKT35_23690) hrcA 5050848..5051870 (-) 1023 WP_254297718.1 heat-inducible transcriptional repressor HrcA -
  NKT35_RS23695 (NKT35_23695) recA 5052028..5053083 (+) 1056 WP_254297719.1 recombinase RecA Machinery gene
  NKT35_RS23700 (NKT35_23700) recX 5053083..5053547 (+) 465 WP_254297720.1 recombination regulator RecX -
  NKT35_RS23705 (NKT35_23705) - 5053551..5054009 (+) 459 WP_254297721.1 SRPBCC domain-containing protein -
  NKT35_RS23710 (NKT35_23710) alaS 5054073..5056706 (+) 2634 WP_254297722.1 alanine--tRNA ligase -
  NKT35_RS23715 (NKT35_23715) - 5056823..5057320 (+) 498 WP_254297723.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37894.21 Da        Isoelectric Point: 4.8171

>NTDB_id=703723 NKT35_RS23695 WP_254297719.1 5052028..5053083(+) (recA) [Chromobacterium sp. IIBBL 290-4]
MASEDKSKALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLSLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQV
VAEAQKLGGTCAYIDAENALDPIYAQKLGVSVEDLLISQPDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVVG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRPGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKANPAIAEEI
ERKIREAVGVKIEINENQGDEEELADDAFDA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=703723 NKT35_RS23695 WP_254297719.1 5052028..5053083(+) (recA) [Chromobacterium sp. IIBBL 290-4]
ATGGCTTCCGAAGACAAGAGCAAGGCCCTGGCCGCCGCCCTCGCCCAGATTGAAAAGCAGTTCGGCAAGGGCTCGATCAT
GCGCATGAGCGACAACCAAATCACCGAAAACCTGCAAGTGATCTCCACCGGTTCGCTGAGCCTGGACCTGGCGCTGGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGCCCGGAATCGTCGGGTAAAACCACCCTGTGTCTGCAAGTG
GTGGCCGAAGCGCAAAAACTGGGCGGCACCTGCGCCTACATCGACGCGGAAAACGCGCTGGACCCGATCTACGCCCAAAA
ACTGGGCGTGAGCGTGGAAGATCTGCTGATCTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCTGCGACATGCTGG
TGCGCTCCAGCGGCGTGGACGTGATCGTGGTGGACTCGGTGGCCGCCCTGGTGCCGAAGGCTGAAATCGAAGGCGAGATG
GGCGACAGCCACGTCGGCCTGCAAGCCCGTTTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGAGGAAGTGGTCGGC
AACGACACCCGCGTCAAAGTGGTGAAGAACAAGGTCTCCCCGCCGTTCCGCCAAGCCGATTTCGAAATCCTGTACGGCGA
AGGCATCTCCCGTCCGGGCGAAATCATCGAACTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCGTGGTACGCCT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGCGAATGGCTGAAGGCCAACCCGGCGATCGCTGAGGAAATC
GAGCGCAAGATCCGCGAAGCGGTGGGCGTGAAGATCGAAATCAACGAAAACCAGGGCGACGAAGAAGAACTCGCCGACGA
CGCCTTCGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

77.581

96.581

0.749
  recA Neisseria gonorrhoeae strain FA1090

77.581

96.581

0.749
  recA Neisseria gonorrhoeae MS11

77.581

96.581

0.749
  recA Pseudomonas stutzeri DSM 10701

72.595

97.721

0.709
  recA Ralstonia pseudosolanacearum GMI1000

78.662

89.459

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.755

92.023

0.67
  recA Vibrio cholerae strain A1552

72.755

92.023

0.67
  recA Glaesserella parasuis strain SC1401

71.254

93.162

0.664
  recA Acinetobacter baylyi ADP1

65.805

99.145

0.652
  recA Acinetobacter baumannii D1279779

69.659

92.023

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.157

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.877

97.151

0.601
  recA Helicobacter pylori 26695

63.253

94.587

0.598
  recA Helicobacter pylori strain NCTC11637

63.253

94.587

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

63.19

92.877

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

61.818

94.017

0.581
  recA Streptococcus mutans UA159

57.507

100

0.578
  recA Streptococcus pneumoniae Rx1

57.349

98.86

0.567
  recA Streptococcus pneumoniae D39

57.349

98.86

0.567
  recA Streptococcus pneumoniae R6

57.349

98.86

0.567
  recA Streptococcus pneumoniae TIGR4

57.349

98.86

0.567
  recA Streptococcus mitis NCTC 12261

58.017

97.721

0.567
  recA Lactococcus lactis subsp. cremoris KW2

58.788

94.017

0.553
  recA Streptococcus pyogenes NZ131

58.485

94.017

0.55
  recA Streptococcus mitis SK321

58.485

94.017

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

93.447

0.541