Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NHL60_RS16400 Genome accession   NZ_CP099975
Coordinates   3455975..3457036 (-) Length   353 a.a.
NCBI ID   WP_253445896.1    Uniprot ID   -
Organism   Halomonas sp. Y3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3450975..3462036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHL60_RS16385 - 3451367..3452617 (-) 1251 WP_253445887.1 aspartate kinase -
  NHL60_RS16390 alaS 3452723..3455335 (-) 2613 WP_253445890.1 alanine--tRNA ligase -
  NHL60_RS16395 - 3455480..3455971 (-) 492 WP_253445893.1 regulatory protein RecX -
  NHL60_RS16400 recA 3455975..3457036 (-) 1062 WP_253445896.1 recombinase RecA Machinery gene
  NHL60_RS16405 - 3457149..3457664 (-) 516 WP_253445899.1 CinA family protein -
  NHL60_RS16410 - 3458171..3458767 (+) 597 WP_168942966.1 DUF6088 family protein -
  NHL60_RS16415 - 3458760..3459827 (+) 1068 WP_253445903.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  NHL60_RS16420 - 3459836..3460708 (+) 873 WP_253445906.1 restriction endonuclease -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37637.90 Da        Isoelectric Point: 4.9171

>NTDB_id=703090 NHL60_RS16400 WP_253445896.1 3455975..3457036(-) (recA) [Halomonas sp. Y3]
MAQDDNRSKALNAALSQIERQFGKGTVMRLGDTPRVAMPAVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAEAQKQGKVCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHIKNANCLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCSLIDKAGAWYSYQGNKIGQGKANAAQFLEDNPAVMEEI
ESGIRGQLLAAPAPKEEAEAPEAAQASREDDLL

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=703090 NHL60_RS16400 WP_253445896.1 3455975..3457036(-) (recA) [Halomonas sp. Y3]
ATGGCTCAGGATGACAACCGCTCCAAGGCGTTGAACGCCGCGCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGGACCGT
GATGCGCCTCGGCGATACGCCCCGGGTGGCCATGCCGGCGGTCTCCACCGGCTCCCTGGGCCTCGATATCGCGCTGGGGA
TCGGCGGCCTGCCCTACGGCCGCGTGGTGGAGATCTTCGGGCCGGAATCCTCTGGCAAGACCACCCTGACCCTCTCGGTG
ATCGCCGAGGCCCAGAAGCAGGGCAAGGTGTGCGCCTTCATCGACGCCGAGCACGCCCTGGACCCGAGCTACGCCGAGAA
GCTCGGCGTCAACCTCGACGACCTGCTGGTCTCCCAGCCGGACACCGGCGAGCAGGCCCTCGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTCATCATCATCGACTCGGTGGCGGCGCTCACTCCCCGGGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGATTACCGGTCACATCAAGAACGCCAA
CTGCCTGGTGGTCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCA
ACGCCCTCAAGTTCTACGCCAGCGTGCGCCTCGACATTCGCCGCACCGGCTCGGTGAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCCTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGCATCTACCATGCCGGCGAGGTGATCGATCTCGGGGTGCAGTGCAGCCTGATCGACAAGGCCGGTGCCTGGTACAGCT
ACCAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCCGTCATGGAGGAGATC
GAGAGCGGGATTCGCGGCCAGCTGCTCGCCGCTCCGGCCCCGAAGGAGGAAGCCGAGGCGCCTGAGGCTGCCCAGGCCAG
CCGCGAGGACGACCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.303

93.484

0.751
  recA Acinetobacter baylyi ADP1

72.571

99.15

0.72
  recA Acinetobacter baumannii D1279779

75.153

92.351

0.694
  recA Vibrio cholerae strain A1552

68.915

96.601

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.915

96.601

0.666
  recA Glaesserella parasuis strain SC1401

68.513

97.167

0.666
  recA Neisseria gonorrhoeae MS11

71.739

91.218

0.654
  recA Neisseria gonorrhoeae MS11

71.739

91.218

0.654
  recA Neisseria gonorrhoeae strain FA1090

71.739

91.218

0.654
  recA Ralstonia pseudosolanacearum GMI1000

71.746

89.235

0.64
  recA Helicobacter pylori 26695

60.519

98.3

0.595
  recA Helicobacter pylori strain NCTC11637

60.519

98.3

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.351

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.162

94.334

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

90.652

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

57.391

97.734

0.561
  recA Streptococcus mitis NCTC 12261

57.267

97.45

0.558
  recA Streptococcus mutans UA159

58.716

92.635

0.544
  recA Streptococcus mitis SK321

58.896

92.351

0.544
  recA Streptococcus pyogenes NZ131

58.769

92.068

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

92.351

0.535
  recA Streptococcus pneumoniae D39

57.362

92.351

0.53
  recA Streptococcus pneumoniae TIGR4

57.362

92.351

0.53
  recA Streptococcus pneumoniae R6

57.362

92.351

0.53
  recA Streptococcus pneumoniae Rx1

57.362

92.351

0.53
  recA Lactococcus lactis subsp. cremoris KW2

56.966

91.501

0.521