Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NKF27_RS16860 Genome accession   NZ_CP099965
Coordinates   3919585..3920655 (-) Length   356 a.a.
NCBI ID   WP_045991129.1    Uniprot ID   A0A3N9U621
Organism   Halomonas sp. DN3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3914585..3925655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKF27_RS16845 (NKF27_16845) - 3914813..3916063 (-) 1251 WP_253553517.1 aspartate kinase -
  NKF27_RS16850 (NKF27_16850) alaS 3916177..3918783 (-) 2607 WP_253553520.1 alanine--tRNA ligase -
  NKF27_RS16855 (NKF27_16855) - 3918967..3919440 (-) 474 WP_253553523.1 regulatory protein RecX -
  NKF27_RS16860 (NKF27_16860) recA 3919585..3920655 (-) 1071 WP_045991129.1 recombinase RecA Machinery gene
  NKF27_RS16865 (NKF27_16865) - 3920949..3921449 (-) 501 WP_253553526.1 CinA family protein -
  NKF27_RS16870 (NKF27_16870) - 3921640..3921798 (-) 159 WP_045991131.1 YqaE/Pmp3 family membrane protein -
  NKF27_RS16875 (NKF27_16875) mutS 3922150..3924741 (+) 2592 WP_253556498.1 DNA mismatch repair protein MutS -
  NKF27_RS16880 (NKF27_16880) fdxA 3924994..3925317 (+) 324 WP_045991132.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38079.40 Da        Isoelectric Point: 4.9151

>NTDB_id=703022 NKF27_RS16860 WP_045991129.1 3919585..3920655(-) (recA) [Halomonas sp. DN3]
MAQDQNRSKALDAALSQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQKDGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCKLVDKAGAWYSYQGNKIGQGKANAAQFLEDNPAIMEEI
ESQIRAQLLTQPEPKKSEKEAEAAAPAGDDLGDDLL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=703022 NKF27_RS16860 WP_045991129.1 3919585..3920655(-) (recA) [Halomonas sp. DN3]
ATGGCGCAGGATCAGAACCGCAGCAAGGCGCTGGACGCCGCCCTTTCCCAGATCGATCGCCAGTTCGGCAAGGGTACGGT
GATGCGTCTGGGAGACGCTCCCAGGGTGGTGATGCCGTCGGTATCCACCGGCTCGTTGGGTCTCGATATCGCACTTGGCA
TCGGCGGTCTGCCCTATGGTCGAGTGGTGGAGATCTTTGGTCCGGAGTCCTCGGGCAAGACCACCCTGACACTGTCGGTG
ATCGCCCAGGCCCAGAAGGACGGCAAGACCTGCGCCTTTATCGACGCCGAGCATGCCCTCGATCCCAGCTACGCCGAAAA
GCTCGGCGTCAATCTGGATGATCTGCTGGTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGCGACATGCTGG
TGCGTTCCGGTGGCGTCGACGTGATCATCATCGACTCGGTGGCGGCGCTGACGCCCAGAGCCGAGATCGAAGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCCCGACTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAATATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGTAGCCCCGAGACCACCACCGGCGGTA
ACGCCCTGAAGTTCTACTCGAGCGTGCGTCTGGATATCCGTCGTACCGGCTCGGTCAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCCTTCCGTCAGGCCGAATTCCAGATCCTCTACGGCAA
GGGCATCTACCACGCCGGCGAGGTGGTGGACCTGGGTGTTCAGTGCAAGCTGGTGGACAAGGCCGGCGCCTGGTACAGCT
ATCAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCCATCATGGAAGAGATC
GAGTCCCAGATTCGTGCCCAGCTGCTGACCCAGCCGGAGCCGAAGAAGAGCGAGAAGGAAGCGGAAGCCGCGGCGCCCGC
TGGCGACGACCTTGGCGACGATCTGCTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N9U621

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.714

98.315

0.764
  recA Acinetobacter baylyi ADP1

76.829

92.135

0.708
  recA Acinetobacter baumannii D1279779

76.147

91.854

0.699
  recA Vibrio cholerae strain A1552

69.075

97.191

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.075

97.191

0.671
  recA Glaesserella parasuis strain SC1401

70.732

92.135

0.652
  recA Neisseria gonorrhoeae MS11

70.807

90.449

0.64
  recA Neisseria gonorrhoeae MS11

70.807

90.449

0.64
  recA Neisseria gonorrhoeae strain FA1090

70.807

90.449

0.64
  recA Ralstonia pseudosolanacearum GMI1000

71.429

88.483

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

91.573

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

93.82

0.579
  recA Helicobacter pylori 26695

61.377

93.82

0.576
  recA Streptococcus mutans UA159

57.79

99.157

0.573
  recA Helicobacter pylori strain NCTC11637

60.778

93.82

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

89.888

0.565
  recA Streptococcus mitis NCTC 12261

55.556

100

0.562
  recA Streptococcus mitis SK321

55.278

100

0.559
  recA Streptococcus pneumoniae R6

53.678

100

0.553
  recA Streptococcus pneumoniae TIGR4

53.678

100

0.553
  recA Streptococcus pneumoniae Rx1

53.678

100

0.553
  recA Streptococcus pneumoniae D39

53.678

100

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.509

91.573

0.545
  recA Streptococcus pyogenes NZ131

58.282

91.573

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.231

91.292

0.522
  recA Lactococcus lactis subsp. cremoris KW2

55.864

91.011

0.508