Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NGM44_RS07465 Genome accession   NZ_CP099960
Coordinates   1586327..1587400 (-) Length   357 a.a.
NCBI ID   WP_253223077.1    Uniprot ID   -
Organism   Moraxella sp. FZFQ2102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1581327..1592400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM44_RS07445 (NGM44_07445) - 1582795..1583214 (-) 420 WP_253223073.1 hypothetical protein -
  NGM44_RS07450 (NGM44_07450) - 1583355..1583828 (-) 474 WP_253223074.1 DUF2799 domain-containing protein -
  NGM44_RS07455 (NGM44_07455) - 1584057..1584557 (-) 501 WP_253223075.1 MliC family protein -
  NGM44_RS07460 (NGM44_07460) - 1585287..1586309 (-) 1023 WP_253223076.1 regulatory protein RecX -
  NGM44_RS07465 (NGM44_07465) recA 1586327..1587400 (-) 1074 WP_253223077.1 recombinase RecA Machinery gene
  NGM44_RS07470 (NGM44_07470) katG 1588076..1590241 (-) 2166 WP_253223078.1 catalase/peroxidase HPI -
  NGM44_RS07475 (NGM44_07475) iscX 1590501..1590698 (+) 198 WP_078253014.1 Fe-S cluster assembly protein IscX -
  NGM44_RS07480 (NGM44_07480) - 1590764..1591792 (-) 1029 WP_253223079.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38241.65 Da        Isoelectric Point: 4.6949

>NTDB_id=702982 NGM44_RS07465 WP_253223077.1 1586327..1587400(-) (recA) [Moraxella sp. FZFQ2102]
MDENKEKALKAALAQIEKQFGKNTIMHLGDESAKLDVDVVSTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQTI
AECQKQGGTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDNGEQALEIADMLVRSGAIDMIVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEILGS
ETRVKVIKNKMAPPFRQTEFQIMYGEGINRLGEIIDLGVDIGVVGKSGAWYSYGDGKIGQGKANTVKYLQEHPEIAAEIE
AKVRESKLTGTSSAPSASNDTDEVPEYVEGMEDGDAF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=702982 NGM44_RS07465 WP_253223077.1 1586327..1587400(-) (recA) [Moraxella sp. FZFQ2102]
GTGGACGAAAATAAAGAGAAAGCGCTCAAGGCTGCCCTTGCGCAGATCGAAAAGCAATTTGGCAAAAACACTATCATGCA
TCTAGGCGACGAATCCGCCAAGTTGGATGTTGATGTGGTTTCAACAGGCTCGCTCGGTCTGGACATCGCGCTAGGCATCG
GCGGTCTGCCCAAAGGTCGTATCATCGAGATCTTCGGCCCTGAAAGCTCGGGTAAAACCACCCTAACGCTACAAACCATC
GCCGAATGCCAAAAGCAAGGTGGCACTTGTGCATTCATCGATGCTGAACACGCACTCGATCCGATTTACGCCAAAAAGCT
TGGCGTGGACATCGATGCCCTATTGGTCTCACAACCTGACAACGGCGAACAAGCACTTGAAATCGCTGATATGCTCGTCC
GCTCTGGTGCGATTGATATGATCGTCGTGGACTCGGTCGCTGCCCTGACCCCAAAAGCCGAAATCGAAGGCGAAATGGGC
GATAGCCACATGGGTCTGCAAGCGCGTCTGATGAGCCAAGCTTTGCGTAAAATCACGGGTAATGCCAAGCGCTCAAACTG
CATGGTGATTTTTATTAACCAAATCCGTATGAAAATCGGCGTCATGTTTGGCTCACCTGAGACCACTACAGGCGGTAATG
CGCTGAAATTCTATGCATCAGTACGCCTTGACATCCGCCGCATTGGCAGCGTCAAAGATGGCGATGAGATTTTGGGCTCA
GAAACGCGCGTGAAAGTCATCAAAAACAAGATGGCACCACCATTTCGCCAAACTGAATTCCAGATCATGTATGGCGAAGG
CATCAACCGCCTAGGCGAGATCATCGACCTTGGTGTGGACATCGGTGTCGTCGGCAAATCAGGTGCATGGTACAGCTATG
GCGATGGCAAAATCGGTCAAGGCAAGGCCAACACGGTGAAATATCTACAAGAACACCCAGAAATCGCCGCAGAAATCGAA
GCCAAAGTACGCGAATCAAAGCTAACCGGTACATCAAGCGCACCAAGTGCAAGCAATGATACTGATGAAGTGCCTGAGTA
TGTCGAAGGCATGGAAGATGGCGACGCGTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

77.937

97.759

0.762
  recA Acinetobacter baumannii D1279779

80.299

93.838

0.754
  recA Pseudomonas stutzeri DSM 10701

74.852

94.678

0.709
  recA Vibrio cholerae strain A1552

71.388

98.88

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.388

98.88

0.706
  recA Glaesserella parasuis strain SC1401

69.801

98.319

0.686
  recA Neisseria gonorrhoeae MS11

70.988

90.756

0.644
  recA Neisseria gonorrhoeae MS11

70.988

90.756

0.644
  recA Neisseria gonorrhoeae strain FA1090

70.988

90.756

0.644
  recA Ralstonia pseudosolanacearum GMI1000

73.871

86.835

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.361

91.597

0.608
  recA Helicobacter pylori 26695

65.749

91.597

0.602
  recA Helicobacter pylori strain NCTC11637

65.443

91.597

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

92.157

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

90.196

0.569
  recA Streptococcus pneumoniae Rx1

61.728

90.756

0.56
  recA Streptococcus pneumoniae D39

61.728

90.756

0.56
  recA Streptococcus pneumoniae R6

61.728

90.756

0.56
  recA Streptococcus pneumoniae TIGR4

61.728

90.756

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.801

90.196

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

57.771

95.518

0.552
  recA Streptococcus mitis SK321

60.802

90.756

0.552
  recA Streptococcus mitis NCTC 12261

60.802

90.756

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.816

91.317

0.546
  recA Streptococcus pyogenes NZ131

59.202

91.317

0.541
  recA Streptococcus mutans UA159

58.589

91.317

0.535