Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NKE59_RS08485 Genome accession   NZ_CP099959
Coordinates   1678777..1679871 (-) Length   364 a.a.
NCBI ID   WP_353438541.1    Uniprot ID   A0AAU8A1I3
Organism   Polynucleobacter sp. UK-FUSCHL-C3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673777..1684871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKE59_RS08455 (NKE59_08420) - 1674503..1674634 (+) 132 Protein_1649 cyclic pyranopterin monophosphate synthase MoaC -
  NKE59_RS08460 (NKE59_08425) - 1674657..1675157 (-) 501 WP_353438534.1 pilin -
  NKE59_RS08465 (NKE59_08435) - 1675254..1675955 (-) 702 WP_353438535.1 TerC family protein -
  NKE59_RS08470 (NKE59_08440) sucD 1676037..1676930 (-) 894 WP_353438536.1 succinate--CoA ligase subunit alpha -
  NKE59_RS08475 (NKE59_08445) sucC 1676960..1678126 (-) 1167 WP_353438538.1 ADP-forming succinate--CoA ligase subunit beta -
  NKE59_RS08480 (NKE59_08450) recX 1678280..1678777 (-) 498 WP_353438539.1 recombination regulator RecX -
  NKE59_RS08485 (NKE59_08455) recA 1678777..1679871 (-) 1095 WP_353438541.1 recombinase RecA Machinery gene
  NKE59_RS08490 (NKE59_08460) - 1680057..1680596 (-) 540 WP_353438542.1 DUF2878 domain-containing protein -
  NKE59_RS08495 (NKE59_08465) - 1680608..1681162 (-) 555 WP_353438543.1 DUF3833 domain-containing protein -
  NKE59_RS08500 (NKE59_08470) - 1681191..1681757 (-) 567 WP_353438544.1 chalcone isomerase family protein -
  NKE59_RS08505 (NKE59_08475) - 1681883..1684024 (-) 2142 WP_353438546.1 sodium:solute symporter family protein -
  NKE59_RS08510 (NKE59_08480) - 1684027..1684290 (-) 264 WP_353438548.1 DUF4212 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39075.58 Da        Isoelectric Point: 4.7837

>NTDB_id=702968 NKE59_RS08485 WP_353438541.1 1678777..1679871(-) (recA) [Polynucleobacter sp. UK-FUSCHL-C3]
MNDKKKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEINQDIQVVSSGSLGLDIALGVGGLARGRVIEIYG
PESSGKTTLTLHAVAEMQKLGGTCAFIDAEHALDVQYAAKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSV
AALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGTIKRTNSMVIFINQIRMKIGVMFGSPETTTGGNALKFYATMRLDIR
RIGSIKKGDEVVGNETRVKVAKNKVSPPFREAIFDIMYGQGISREGEIIDMGVEADIVEKSGAWYSYGGERIGQGKDNAR
EFLKENPEMAKEIEAKIREKLGVKNGGSLISETLDDEEMESADA

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=702968 NKE59_RS08485 WP_353438541.1 1678777..1679871(-) (recA) [Polynucleobacter sp. UK-FUSCHL-C3]
ATGAACGACAAGAAAAAATCAGCCTCATCCGAATTTGAAGGAATGAGTGGAGACAAGCAAAAAGCATTAACGGCTGCCTT
AGCGCAAATTGAAAAACAATTTGGTAAAGGCTCGATCATGCGTCTGGGTGATGCAGAGATCAATCAGGACATACAGGTGG
TATCGAGCGGTTCTCTCGGTTTAGATATTGCATTAGGTGTTGGCGGCCTGGCACGCGGACGAGTGATTGAAATCTACGGA
CCAGAATCATCCGGTAAAACGACGCTCACTTTGCATGCAGTTGCAGAGATGCAAAAACTGGGTGGCACTTGTGCGTTCAT
CGATGCAGAGCATGCATTGGATGTGCAATATGCAGCCAAACTCGGCGTCGATGTCAATAATTTATTAATCTCCCAACCAG
ATACGGGTGAACAAGCATTGGAAATTGCTGATGCGTTAGTTCGCTCTGGCTCAATTGATCTCATTGTGATTGACTCAGTG
GCTGCATTAGTACCGAGGGCAGAGATTGAAGGTGATATGGGCGACTCATTGCCAGGCTTGCAAGCTCGCTTAATGAGTCA
GGCTCTACGTAAATTAACCGGTACGATTAAGCGAACCAATTCTATGGTGATCTTCATCAATCAAATTCGGATGAAGATTG
GCGTGATGTTTGGGTCTCCAGAAACAACTACTGGCGGTAATGCCCTGAAGTTCTACGCCACGATGCGATTGGATATCCGC
CGCATTGGCAGTATTAAGAAGGGCGATGAAGTCGTTGGCAACGAAACACGCGTGAAAGTGGCGAAGAACAAAGTATCGCC
ACCATTCCGCGAAGCCATTTTTGACATCATGTATGGCCAAGGAATTTCACGTGAGGGTGAAATCATTGATATGGGCGTAG
AAGCCGATATCGTCGAGAAGTCGGGTGCTTGGTATAGCTATGGCGGAGAGCGCATTGGGCAAGGTAAAGATAATGCCCGT
GAGTTTTTGAAAGAAAACCCTGAGATGGCTAAAGAGATTGAGGCAAAGATCCGTGAGAAGTTGGGTGTTAAAAACGGTGG
CTCCTTGATTAGCGAAACACTCGATGATGAGGAGATGGAATCTGCGGACGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.521

95.879

0.791
  recA Neisseria gonorrhoeae strain FA1090

73.636

90.659

0.668
  recA Neisseria gonorrhoeae MS11

73.636

90.659

0.668
  recA Neisseria gonorrhoeae MS11

73.636

90.659

0.668
  recA Acinetobacter baylyi ADP1

71.515

90.659

0.648
  recA Vibrio cholerae strain A1552

69.322

93.132

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.322

93.132

0.646
  recA Acinetobacter baumannii D1279779

71.865

89.835

0.646
  recA Pseudomonas stutzeri DSM 10701

68.421

93.956

0.643
  recA Glaesserella parasuis strain SC1401

67.638

94.231

0.637
  recA Bacillus subtilis subsp. subtilis str. 168

66.364

90.659

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.743

93.956

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.081

94.505

0.596
  recA Helicobacter pylori 26695

65.951

89.56

0.591
  recA Helicobacter pylori strain NCTC11637

65.644

89.56

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

61.988

93.956

0.582
  recA Streptococcus mitis NCTC 12261

60.465

94.505

0.571
  recA Streptococcus pneumoniae TIGR4

61.862

91.484

0.566
  recA Streptococcus pneumoniae Rx1

61.862

91.484

0.566
  recA Streptococcus pneumoniae D39

61.862

91.484

0.566
  recA Streptococcus pneumoniae R6

61.862

91.484

0.566
  recA Lactococcus lactis subsp. cremoris KW2

56.593

100

0.566
  recA Streptococcus mitis SK321

61.261

91.484

0.56
  recA Streptococcus pyogenes NZ131

59.302

94.505

0.56
  recA Streptococcus mutans UA159

60

90.659

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

88.187

0.541