Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NHB35_RS09590 Genome accession   NZ_CP099572
Coordinates   1845172..1846263 (-) Length   363 a.a.
NCBI ID   WP_353432136.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH23A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1840172..1851263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB35_RS09560 (NHB35_09550) moaC 1840394..1840870 (+) 477 WP_353432130.1 cyclic pyranopterin monophosphate synthase MoaC -
  NHB35_RS09565 (NHB35_09555) - 1840923..1841441 (-) 519 WP_353432131.1 pilin -
  NHB35_RS09570 (NHB35_09565) - 1841584..1842288 (-) 705 WP_353432132.1 TerC family protein -
  NHB35_RS09575 (NHB35_09570) sucD 1842376..1843269 (-) 894 WP_353432133.1 succinate--CoA ligase subunit alpha -
  NHB35_RS09580 (NHB35_09575) sucC 1843285..1844454 (-) 1170 WP_353427238.1 ADP-forming succinate--CoA ligase subunit beta -
  NHB35_RS09585 (NHB35_09580) recX 1844642..1845154 (-) 513 WP_353432134.1 recombination regulator RecX -
  NHB35_RS09590 (NHB35_09585) recA 1845172..1846263 (-) 1092 WP_353432136.1 recombinase RecA Machinery gene
  NHB35_RS09595 (NHB35_09590) - 1846383..1846916 (-) 534 WP_353432137.1 DUF2878 domain-containing protein -
  NHB35_RS09605 (NHB35_09600) - 1847213..1848811 (-) 1599 WP_353432138.1 FMN-binding glutamate synthase family protein -
  NHB35_RS09610 - 1849545..1849709 (+) 165 Protein_1879 DUF6150 family protein -
  NHB35_RS09615 (NHB35_09605) - 1849733..1850344 (+) 612 WP_353432139.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38895.40 Da        Isoelectric Point: 4.7801

>NTDB_id=700736 NHB35_RS09590 WP_353432136.1 1845172..1846263(-) (recA) [Polynucleobacter sp. MWH-UH23A]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVVD
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDN
VREFLKENPEIAKDIEAKIREKLGVKTGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=700736 NHB35_RS09590 WP_353432136.1 1845172..1846263(-) (recA) [Polynucleobacter sp. MWH-UH23A]
ATGGCCTTGGATGATAAAAGAAAGTCAGCCTCCTCAGAATTTGAGGGAATGAGTGGAGACAAGCAAAAGGCGTTAACAGC
AGCTTTAGCGCAAATTGAAAAGCAATTTGGCAAGGGCTCAATCATGAGATTGGGCGATGCTGAAATTAGTCAAGATATTC
AGGTGGTCTCCAGCGGTTCATTGGGTTTAGATATTGCACTCGGCGTTGGTGGTCTTGCACGTGGTCGCGTAATTGAAATT
TATGGACCTGAATCATCCGGTAAAACTACTTTAACTTTGCATGCGATTGCAGAAATGCAAAAGCTTGGTGGAACCTGTGC
ATTTATTGATGCTGAACACGCGTTGGATGTTCAATACGCCGGAAAGTTGGGTGTTGATGTAAACAACCTATTGATTTCCC
AACCAGATACTGGTGAGCAGGCTTTGGAAATTGCAGACGCATTAGTGCGTTCTGGCTCGATTGATCTAATCGTAGTTGAC
TCAGTCGCTGCATTGGTCCCGAAGGCTGAAATTGAAGGCGACATGGGCGATTCTTTACCAGGTTTGCAAGCGCGTTTAAT
GAGTCAAGCATTGCGCAAATTAACTGGTGCAATTAAGCGTACCAATACAACAGTCATCTTCATTAACCAGATTCGCATGA
AGATTGGTGTGATGTTTGGTTCTCCAGAAACGACTACTGGCGGTAATGCCTTGAAGTTCTATGCTTCCATGCGTTTAGAT
ATTCGTCGTATTGGCAGCATCAAGAAAGGCGATGAAGTTGTTGGTAATGAAACTCGTGTGAAAGTCGTGAAGAATAAGGT
TTCCCCGCCTTTCCGTGAGGCCATTTTTGACATTATGTATGGTGCTGGCATTTCAAGAGAAGGTGAAATTATTGATATGG
GCGTCGAAGCCGATATCGTTGAAAAATCGGGATCTTGGTATAGCTACAACGGTGATCGGATTGGTCAAGGGAAAGACAAT
GTGCGCGAGTTCTTGAAAGAGAATCCAGAAATCGCTAAAGACATCGAAGCAAAAATCCGCGAGAAACTAGGCGTTAAAAC
TGGATCTGCTGTAGTGACAGATGTCTTAAGCGAGGAAGAAGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.78

98.898

0.799
  recA Neisseria gonorrhoeae MS11

74.848

90.909

0.68
  recA Neisseria gonorrhoeae MS11

74.848

90.909

0.68
  recA Neisseria gonorrhoeae strain FA1090

74.848

90.909

0.68
  recA Acinetobacter baumannii D1279779

70.93

94.766

0.672
  recA Acinetobacter baylyi ADP1

70.64

94.766

0.669
  recA Pseudomonas stutzeri DSM 10701

70.501

93.388

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.588

95.592

0.656
  recA Vibrio cholerae strain A1552

68.588

95.592

0.656
  recA Glaesserella parasuis strain SC1401

69.789

91.185

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

67.771

91.46

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.789

94.215

0.62
  recA Helicobacter pylori 26695

67.178

89.807

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.861

91.185

0.601
  recA Helicobacter pylori strain NCTC11637

66.871

89.807

0.601
  recA Streptococcus pneumoniae D39

61.012

92.562

0.565
  recA Streptococcus pneumoniae Rx1

61.012

92.562

0.565
  recA Streptococcus pneumoniae R6

61.012

92.562

0.565
  recA Streptococcus pneumoniae TIGR4

61.012

92.562

0.565
  recA Streptococcus mitis NCTC 12261

58.621

95.868

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

89.807

0.562
  recA Streptococcus mutans UA159

59.13

95.041

0.562
  recA Streptococcus mitis SK321

60.36

91.736

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.929

92.562

0.545
  recA Streptococcus pyogenes NZ131

59.878

90.634

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

88.43

0.54