Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NHB34_RS08670 Genome accession   NZ_CP099571
Coordinates   1711469..1712560 (-) Length   363 a.a.
NCBI ID   WP_353427240.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH19D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706469..1717560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB34_RS08640 (NHB34_08635) moaC 1706699..1707172 (+) 474 WP_353427235.1 cyclic pyranopterin monophosphate synthase MoaC -
  NHB34_RS08645 (NHB34_08640) - 1707229..1707747 (-) 519 WP_353427236.1 pilin -
  NHB34_RS08650 (NHB34_08645) - 1707874..1708584 (-) 711 WP_353427237.1 TerC family protein -
  NHB34_RS08655 (NHB34_08650) sucD 1708688..1709581 (-) 894 WP_173956421.1 succinate--CoA ligase subunit alpha -
  NHB34_RS08660 (NHB34_08655) sucC 1709597..1710766 (-) 1170 WP_353427238.1 ADP-forming succinate--CoA ligase subunit beta -
  NHB34_RS08665 (NHB34_08660) recX 1710952..1711464 (-) 513 WP_353427239.1 recombination regulator RecX -
  NHB34_RS08670 (NHB34_08665) recA 1711469..1712560 (-) 1092 WP_353427240.1 recombinase RecA Machinery gene
  NHB34_RS08675 (NHB34_08670) - 1712679..1713212 (-) 534 WP_353427241.1 DUF2878 domain-containing protein -
  NHB34_RS08685 (NHB34_08680) - 1713489..1714250 (-) 762 WP_353427242.1 DUF6339 family protein -
  NHB34_RS08690 (NHB34_08685) - 1714240..1715070 (-) 831 WP_353427243.1 hypothetical protein -
  NHB34_RS08695 (NHB34_08690) - 1715054..1716967 (-) 1914 WP_353427244.1 hypothetical protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38879.40 Da        Isoelectric Point: 4.7837

>NTDB_id=700726 NHB34_RS08670 WP_353427240.1 1711469..1712560(-) (recA) [Polynucleobacter sp. MWH-UH19D]
MALDEKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVVD
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDN
VREFLKENPDIAKEIEAKIREKLGVKAGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=700726 NHB34_RS08670 WP_353427240.1 1711469..1712560(-) (recA) [Polynucleobacter sp. MWH-UH19D]
ATGGCCTTGGATGAGAAAAGAAAGTCAGCCTCCTCAGAGTTTGAGGGGATGAGTGGAGACAAGCAAAAGGCGTTAACAGC
AGCTTTAGCGCAAATTGAAAAGCAATTTGGCAAAGGCTCAATCATGAGATTGGGCGATGCTGAAATTAGTCAAGATATTC
AGGTGGTATCGAGCGGTTCGTTGGGTTTGGATATTGCGCTCGGCGTTGGTGGTCTTGCGCGTGGTCGCGTCATTGAAATT
TACGGACCTGAGTCATCCGGTAAAACCACGTTAACTTTGCATGCAATTGCAGAGATGCAAAAGCTTGGTGGCACCTGTGC
ATTTATTGATGCTGAGCACGCATTAGATGTTCAGTACGCAGGCAAGTTGGGTGTTGACGTAAACAACCTCTTAATTTCTC
AACCCGATACTGGCGAACAAGCTTTAGAAATTGCAGACGCATTAGTGCGTTCTGGTTCGATTGATTTAATCGTGGTGGAC
TCGGTTGCAGCATTGGTACCAAAAGCCGAAATTGAAGGCGACATGGGCGATTCTCTGCCAGGTTTACAGGCCCGCTTAAT
GAGCCAAGCCTTGCGCAAACTTACCGGGGCAATCAAGCGTACTAATACAACCGTTATCTTCATTAATCAGATTCGTATGA
AGATCGGCGTGATGTTTGGTTCTCCAGAAACAACTACTGGTGGTAATGCGTTGAAGTTCTACGCTTCTATGCGGTTGGAT
ATTCGTCGTATCGGTAGCATCAAGAAAGGCGATGAAGTTGTTGGTAATGAAACTCGTGTGAAAGTCGTGAAGAATAAGGT
TTCTCCACCTTTCCGCGAAGCTATTTTTGACATCATGTATGGCGCGGGCATCTCAAGAGAAGGTGAAATTATCGATATGG
GTGTTGAGGCTGATATCGTTGAAAAATCAGGTTCTTGGTATAGCTATAACGGCGATCGTATTGGTCAAGGCAAAGACAAT
GTGCGTGAATTCTTGAAAGAGAATCCAGACATCGCCAAAGAGATCGAAGCAAAAATCCGTGAAAAGTTGGGTGTCAAAGC
TGGATCTGCGGTAGTGACAGATGTTCTAAGCGAGGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.501

98.898

0.796
  recA Neisseria gonorrhoeae MS11

74.848

90.909

0.68
  recA Neisseria gonorrhoeae MS11

74.848

90.909

0.68
  recA Neisseria gonorrhoeae strain FA1090

74.848

90.909

0.68
  recA Acinetobacter baylyi ADP1

71.221

94.766

0.675
  recA Acinetobacter baumannii D1279779

70.93

94.766

0.672
  recA Pseudomonas stutzeri DSM 10701

70.501

93.388

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.3

95.592

0.653
  recA Vibrio cholerae strain A1552

68.3

95.592

0.653
  recA Glaesserella parasuis strain SC1401

69.486

91.185

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

69.018

89.807

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.789

94.215

0.62
  recA Helicobacter pylori 26695

67.485

89.807

0.606
  recA Helicobacter pylori strain NCTC11637

67.178

89.807

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.861

91.185

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

63.19

89.807

0.567
  recA Streptococcus pneumoniae R6

61.012

92.562

0.565
  recA Streptococcus pneumoniae Rx1

61.012

92.562

0.565
  recA Streptococcus pneumoniae D39

61.012

92.562

0.565
  recA Streptococcus pneumoniae TIGR4

61.012

92.562

0.565
  recA Streptococcus mitis NCTC 12261

58.621

95.868

0.562
  recA Streptococcus mutans UA159

58.551

95.041

0.556
  recA Streptococcus mitis SK321

60.606

90.909

0.551
  recA Lactococcus lactis subsp. cremoris KW2

60

90.909

0.545
  recA Streptococcus pyogenes NZ131

60.182

90.634

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

88.43

0.54