Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NGX11_RS00625 Genome accession   NZ_CP099556
Coordinates   132037..133086 (-) Length   349 a.a.
NCBI ID   WP_263514591.1    Uniprot ID   A0AA46S155
Organism   Aliarcobacter cryaerophilus strain ICDCAC48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 127037..138086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGX11_RS00605 (NGX11_00595) - 127048..128139 (-) 1092 WP_263514588.1 ATP-binding protein -
  NGX11_RS00610 (NGX11_00600) topA 128319..130652 (+) 2334 WP_263514589.1 type I DNA topoisomerase -
  NGX11_RS00615 (NGX11_00605) - 130653..131165 (+) 513 WP_263514590.1 YfcE family phosphodiesterase -
  NGX11_RS00620 (NGX11_00610) - 131155..132003 (+) 849 WP_260885481.1 biotin synthase -
  NGX11_RS00625 (NGX11_00615) recA 132037..133086 (-) 1050 WP_263514591.1 recombinase RecA Machinery gene
  NGX11_RS00630 (NGX11_00620) - 133180..133368 (-) 189 WP_141049399.1 hypothetical protein -
  NGX11_RS00635 (NGX11_00625) - 133514..134710 (+) 1197 WP_263514592.1 UDP-N-acetylglucosamine 4,6-dehydratase -
  NGX11_RS00640 (NGX11_00630) - 134712..135848 (+) 1137 WP_263514593.1 LegC family aminotransferase -
  NGX11_RS00645 (NGX11_00635) - 135850..136656 (+) 807 WP_263514594.1 KilA-N domain-containing protein -
  NGX11_RS00650 (NGX11_00640) - 136656..137231 (+) 576 WP_263514595.1 NeuD/PglB/VioB family sugar acetyltransferase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37410.86 Da        Isoelectric Point: 4.7942

>NTDB_id=700687 NGX11_RS00625 WP_263514591.1 132037..133086(-) (recA) [Aliarcobacter cryaerophilus strain ICDCAC48]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDIDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIIDKAGAWFSYGDTKIGQGRENSKVFLRDNTAIAKEIE
DKILNSMGINDAIIAGSIDSEDEASSLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=700687 NGX11_RS00625 WP_263514591.1 132037..133086(-) (recA) [Aliarcobacter cryaerophilus strain ICDCAC48]
ATGGATGAAAATCAAAAAAAATCACTTGAACTTGCTATTAAACAAATAGACAAAGCTTTTGGAAAAGGTACGCTTATTAG
ATTAGGAGATAAAGAGGTAATTCCAACTGAAGCTATTAGCACTGGTTCACTTGGTCTTGATTTAGCTCTTGGTGTTGGTG
GTTTACCAAAAGGAAGAGTTATTGAAATTTATGGACCTGAAAGTTCTGGTAAAACAACTTTAACACTTCACGCAATTGCT
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCATTTATAGATGCAGAACACGCACTTGATGTAAAATATGCAAAAGATATTGG
TGTAGATATTGACAATTTACTAGTTTCTCAACCAGATTTTGGGGAGCAAGCTTTAGAGATTCTTGAAACTGTTATTAGAA
GTGGTGCTGTTGATTTAGTTGTTGTGGATTCAGTTGCTGCCTTAACACCTAAAGTAGAAATTGATGGTGATATGGATGAT
CAACAAGTTGGAGTTCAAGCTAGACTTATGAGTAAAGCTTTAAGAAAGATAACTGGACTTTTAAGCAAAATGAATTGTAC
AGTTATCTTTATCAACCAAATAAGAATGAAAATAGGAATGACAGGATATGGAAGCCCAGAGACAACAACAGGTGGGAATG
CTTTAAAATTCTACTCATCAGTAAGACTTGATATTAGAAGAATTGCAACTTTAAAACAGGGTGAGAACTCAATTGGAAAT
AGAGTAAAAGTAAAAGTTGTTAAAAATAAAGTTGCTGCTCCATTCAAACAAGCTGAGTTTGATATTATGTTTGGTGAAGG
AATTTCAAAAACTGGTGAGCTTGTTGATTATGGTGTTAAACTTGATATTATTGATAAAGCTGGAGCTTGGTTTAGTTATG
GTGATACAAAAATTGGACAAGGAAGAGAGAACTCTAAAGTCTTCTTAAGAGATAATACAGCTATTGCAAAAGAGATTGAA
GATAAAATTTTAAACTCTATGGGAATAAATGATGCAATAATTGCAGGAAGTATAGATAGTGAAGATGAAGCATCTTCTTT
AGATGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.51

98.281

0.742
  recA Helicobacter pylori strain NCTC11637

76.048

95.702

0.728
  recA Helicobacter pylori 26695

75.749

95.702

0.725
  recA Acinetobacter baumannii D1279779

63.714

100

0.639
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

94.269

0.61
  recA Neisseria gonorrhoeae MS11

61.808

98.281

0.607
  recA Neisseria gonorrhoeae MS11

61.808

98.281

0.607
  recA Neisseria gonorrhoeae strain FA1090

61.808

98.281

0.607
  recA Acinetobacter baylyi ADP1

66.25

91.691

0.607
  recA Glaesserella parasuis strain SC1401

60.174

98.567

0.593
  recA Pseudomonas stutzeri DSM 10701

59.249

99.14

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.121

94.556

0.587
  recA Vibrio cholerae strain A1552

62.121

94.556

0.587
  recA Ralstonia pseudosolanacearum GMI1000

63.81

90.258

0.576
  recA Streptococcus mitis NCTC 12261

57.593

100

0.576
  recA Streptococcus pyogenes NZ131

56.022

100

0.573
  recA Streptococcus mitis SK321

56.734

100

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

57.31

97.994

0.562
  recA Streptococcus pneumoniae TIGR4

57.018

97.994

0.559
  recA Streptococcus pneumoniae Rx1

57.018

97.994

0.559
  recA Streptococcus pneumoniae D39

57.018

97.994

0.559
  recA Streptococcus pneumoniae R6

57.018

97.994

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

59.451

93.983

0.559
  recA Streptococcus mutans UA159

58.308

94.842

0.553
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.269

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.362

93.41

0.536