Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ALSL_RS08220 Genome accession   NZ_AP018560
Coordinates   1753922..1754950 (-) Length   342 a.a.
NCBI ID   WP_126538169.1    Uniprot ID   -
Organism   Aerosticca soli strain Dysh456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1748922..1759950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALSL_RS08200 (ALSL_1645) csrA 1749622..1749825 (-) 204 WP_126538161.1 carbon storage regulator CsrA -
  ALSL_RS08205 (ALSL_1646) alaS 1750082..1752724 (-) 2643 WP_126538163.1 alanine--tRNA ligase -
  ALSL_RS08210 (ALSL_1647) - 1752796..1753278 (-) 483 WP_126538165.1 regulatory protein RecX -
  ALSL_RS08215 (ALSL_1648) - 1753287..1753916 (-) 630 WP_126538167.1 short chain dehydrogenase -
  ALSL_RS08220 (ALSL_1649) recA 1753922..1754950 (-) 1029 WP_126538169.1 recombinase RecA Machinery gene
  ALSL_RS08225 (ALSL_1650) - 1755074..1755583 (-) 510 WP_126538171.1 CinA family protein -
  ALSL_RS08230 (ALSL_1651) - 1755743..1756885 (-) 1143 WP_126538173.1 OmpA family protein -
  ALSL_RS08235 (ALSL_1653) - 1756985..1758436 (-) 1452 WP_126538175.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase -
  ALSL_RS08240 (ALSL_1655) - 1758737..1759411 (+) 675 WP_126540143.1 TerC family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36525.72 Da        Isoelectric Point: 5.3408

>NTDB_id=70060 ALSL_RS08220 WP_126538169.1 1753922..1754950(-) (recA) [Aerosticca soli strain Dysh456]
MDDNKRKALASALGQIEKQFGKGAVMRLGDRSEDAVDTVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA
NCQKNGGTAAFVDAEHALDPGYAAKLGVNVDDLLVSQPDTGEQALEIADMLVRSGAVDVVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKKGEEVIGSE
TRVKVVKNKVAPPFRQAEFEILYGEGTSREGEIIELGVAQNLIEKSGAWYSYKGERIGQGKENVRQFLRDNPAIADEIDR
ELRARLLVGGGAALPAVEVEEV

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=70060 ALSL_RS08220 WP_126538169.1 1753922..1754950(-) (recA) [Aerosticca soli strain Dysh456]
ATGGATGACAACAAGCGCAAAGCGCTCGCCTCGGCGCTCGGCCAGATCGAGAAACAATTCGGCAAGGGCGCGGTGATGCG
CCTGGGCGATCGCAGCGAGGATGCGGTCGATACCGTATCCACCGGCTCGCTGGGCCTGGACATCGCGCTCGGCGTGGGCG
GCCTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCGGAATCCTCCGGCAAGACCACGCTGACCCTGCAGGTGATCGCC
AACTGCCAGAAGAACGGCGGCACCGCGGCCTTCGTCGATGCCGAACACGCGCTCGATCCCGGTTATGCGGCCAAGCTCGG
CGTCAACGTCGATGACCTCCTGGTCTCGCAGCCCGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGCGCT
CGGGCGCGGTGGACGTGGTGGTGGTCGACTCCGTCGCCGCGCTCACGCCCAAGGCCGAGATCGAGGGCGAGATGGGCGAT
TCGCACGTCGGCCTGCACGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGAAGTCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCAATGCGC
TCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGAGGAAGTGATCGGCTCGGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGGCCGAGTTCGAAATCCTCTACGGCGAGGGCAC
TTCGCGCGAGGGCGAGATCATCGAGCTTGGCGTGGCGCAGAACCTGATCGAGAAATCCGGCGCCTGGTACAGCTACAAGG
GCGAGCGCATCGGCCAGGGCAAGGAGAACGTGCGCCAGTTTTTGCGGGACAATCCGGCGATCGCCGATGAGATCGACCGC
GAATTGCGGGCGCGGCTGCTGGTCGGCGGCGGCGCCGCATTGCCGGCAGTCGAGGTGGAAGAGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.268

95.906

0.76
  recA Ralstonia pseudosolanacearum GMI1000

72.365

100

0.743
  recA Acinetobacter baylyi ADP1

75.305

95.906

0.722
  recA Acinetobacter baumannii D1279779

72.434

99.708

0.722
  recA Neisseria gonorrhoeae MS11

74.769

95.029

0.711
  recA Neisseria gonorrhoeae MS11

74.769

95.029

0.711
  recA Neisseria gonorrhoeae strain FA1090

74.769

95.029

0.711
  recA Vibrio cholerae strain A1552

73.7

95.614

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

95.614

0.705
  recA Glaesserella parasuis strain SC1401

70.149

97.953

0.687
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.163

96.784

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

96.784

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.25

93.567

0.62
  recA Streptococcus mutans UA159

64.526

95.614

0.617
  recA Streptococcus pyogenes NZ131

63.72

95.906

0.611
  recA Helicobacter pylori strain NCTC11637

64.506

94.737

0.611
  recA Helicobacter pylori 26695

64.198

94.737

0.608
  recA Streptococcus mitis NCTC 12261

62.883

95.322

0.599
  recA Streptococcus pneumoniae TIGR4

62.577

95.322

0.596
  recA Streptococcus pneumoniae Rx1

62.577

95.322

0.596
  recA Streptococcus pneumoniae D39

62.577

95.322

0.596
  recA Streptococcus pneumoniae R6

62.577

95.322

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

63.354

94.152

0.596
  recA Streptococcus mitis SK321

62.27

95.322

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

94.737

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.877

94.737

0.567

Multiple sequence alignment