Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NGM67_RS17410 Genome accession   NZ_CP099545
Coordinates   2707026..2708093 (-) Length   355 a.a.
NCBI ID   WP_225314518.1    Uniprot ID   -
Organism   Photobacterium damselae strain XP-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2702026..2713093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM67_RS17400 (NGM67_17400) alaS 2702707..2705328 (-) 2622 WP_005297824.1 alanine--tRNA ligase -
  NGM67_RS17405 (NGM67_17405) kch 2705605..2706837 (-) 1233 WP_109374755.1 voltage-gated potassium channel protein -
  NGM67_RS17410 (NGM67_17410) recA 2707026..2708093 (-) 1068 WP_225314518.1 recombinase RecA Machinery gene
  NGM67_RS17415 (NGM67_17415) pncC 2708219..2708707 (-) 489 WP_252689955.1 nicotinamide-nucleotide amidase -
  NGM67_RS17420 (NGM67_17420) mutS 2708953..2711523 (+) 2571 WP_420875521.1 DNA mismatch repair protein MutS -
  NGM67_RS17425 (NGM67_17425) rpoS 2711673..2712674 (-) 1002 WP_068968307.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38242.77 Da        Isoelectric Point: 4.8857

>NTDB_id=700570 NGM67_RS17410 WP_225314518.1 2707026..2708093(-) (recA) [Photobacterium damselae strain XP-11]
MESRMDENKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTL
ETIASAQRQGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEG
EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEV
VGNETRIKVVKNKIAAPFKQAETQILYGQGFNRVGELIDLGVKQKLIEKAGAWYSYKGDKIGQGKANAGKYLTENPAIAD
EIEKQIRELLLTPPQEDTTEDASLDAIEAGEDKAF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=700570 NGM67_RS17410 WP_225314518.1 2707026..2708093(-) (recA) [Photobacterium damselae strain XP-11]
ATGGAGAGTCGAATGGACGAGAATAAACAAAAGGCTCTTGCCGCAGCGTTAGGCCAAATTGAGAAGCAGTTCGGTAAAGG
CTCTATCATGAAGCTTGGCGATAACCGTACTATGGATATCGAAACCGTATCAACTGGTTCGTTAGCTCTTGATATCGCAT
TGGGTGCTGGTGGTTTACCTATGGGCCGTATCGTTGAGATTTTTGGTCCTGAATCATCAGGTAAAACAACATTAACATTA
GAAACCATCGCATCAGCTCAGCGCCAAGGTAAAACTTGTGCCTTTATTGATGCTGAGCACGCACTGGATCCTATTTATGC
TAAGAAATTAGGCGTAGATATTGACCAACTTTTGGTTTCTCAGCCAGATACTGGTGAGCAAGCGTTAGAGATTTGTGATG
CATTAGCACGCTCTGGTGCTGTTGACCTTATCGTTGTCGACTCCGTTGCGGCATTAACACCAAAAGCGGAAATTGAAGGC
GAAATGGGTGACTCACACATGGGTCTGCAAGCTCGTATGCTGTCTCAAGCAATGCGTAAGTTAACGGGTAACCTAAAGCA
GTCTAACTGTATGTGTATTTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAACCCAGAAACAACAACTG
GTGGTAATGCGCTTAAGTTTTACGCTTCTGTTCGTCTTGATATCCGTCGTACGGGTTCAATCAAAGATGGCGAAGAAGTT
GTGGGTAACGAAACTCGTATTAAAGTGGTGAAGAACAAAATTGCTGCACCATTTAAGCAAGCTGAAACGCAAATTCTGTA
CGGACAAGGCTTCAACCGTGTTGGTGAGCTTATCGACCTTGGTGTTAAGCAAAAGCTAATTGAAAAAGCTGGTGCTTGGT
ACAGTTATAAAGGCGATAAGATTGGTCAAGGTAAAGCGAATGCAGGTAAATACTTAACCGAGAATCCTGCTATTGCCGAT
GAGATCGAAAAACAAATTCGTGAGTTGTTATTAACACCACCGCAAGAAGATACAACTGAAGATGCTTCTCTTGATGCTAT
CGAAGCTGGTGAAGATAAAGCATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.666

92.676

0.831
  recA Vibrio cholerae strain A1552

89.666

92.676

0.831
  recA Pseudomonas stutzeri DSM 10701

74.487

96.056

0.715
  recA Acinetobacter baumannii D1279779

75.305

92.394

0.696
  recA Acinetobacter baylyi ADP1

73.952

94.085

0.696
  recA Glaesserella parasuis strain SC1401

71.429

92.676

0.662
  recA Neisseria gonorrhoeae MS11

67.836

96.338

0.654
  recA Neisseria gonorrhoeae MS11

67.836

96.338

0.654
  recA Neisseria gonorrhoeae strain FA1090

67.836

96.338

0.654
  recA Ralstonia pseudosolanacearum GMI1000

70.794

88.732

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

91.268

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

90.423

0.58
  recA Streptococcus pneumoniae D39

63.158

90.986

0.575
  recA Streptococcus pneumoniae TIGR4

63.158

90.986

0.575
  recA Streptococcus pneumoniae R6

63.158

90.986

0.575
  recA Streptococcus pneumoniae Rx1

63.158

90.986

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

59.184

96.62

0.572
  recA Streptococcus mitis NCTC 12261

62.539

90.986

0.569
  recA Helicobacter pylori 26695

62.154

91.549

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.239

0.569
  recA Streptococcus mutans UA159

59.064

96.338

0.569
  recA Helicobacter pylori strain NCTC11637

61.846

91.549

0.566
  recA Streptococcus mitis SK321

61.92

90.986

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

91.831

0.552
  recA Streptococcus pyogenes NZ131

59.756

92.394

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.133

90.986

0.538