Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NFJ01_RS00965 Genome accession   NZ_CP099511
Coordinates   210752..211810 (+) Length   352 a.a.
NCBI ID   WP_059177718.1    Uniprot ID   -
Organism   Lelliottia amnigena strain P13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 205752..216810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ01_RS00940 (NFJ01_00940) mltB 206225..207325 (+) 1101 WP_059177714.1 lytic murein transglycosylase B -
  NFJ01_RS00945 (NFJ01_00945) - 207637..208290 (+) 654 WP_131489532.1 ATP-binding cassette domain-containing protein -
  NFJ01_RS00950 (NFJ01_00950) - 208287..209150 (+) 864 WP_252687140.1 metal ABC transporter permease -
  NFJ01_RS00955 (NFJ01_00955) - 209153..210031 (+) 879 WP_059177717.1 metal ABC transporter substrate-binding protein -
  NFJ01_RS00960 (NFJ01_00960) pncC 210162..210659 (+) 498 WP_041689711.1 nicotinamide-nucleotide amidase -
  NFJ01_RS00965 (NFJ01_00965) recA 210752..211810 (+) 1059 WP_059177718.1 recombinase RecA Machinery gene
  NFJ01_RS00970 (NFJ01_00970) recX 211878..212378 (+) 501 WP_252687142.1 recombination regulator RecX -
  NFJ01_RS00975 (NFJ01_00975) alaS 212510..215137 (+) 2628 WP_252687144.1 alanine--tRNA ligase -
  NFJ01_RS00980 (NFJ01_00980) csrA 215379..215564 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37795.23 Da        Isoelectric Point: 4.8702

>NTDB_id=700306 NFJ01_RS00965 WP_059177718.1 210752..211810(+) (recA) [Lelliottia amnigena strain P13]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRVVEIYGPESSGKTTLTLQV
IASAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDNVIG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPDFVVDAADAEETNPDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=700306 NFJ01_RS00965 WP_059177718.1 210752..211810(+) (recA) [Lelliottia amnigena strain P13]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACGATCTCCACGGGTTCGCTTTCTCTGGACATCGCGCTGGGCG
CGGGTGGCCTGCCAATGGGCCGTGTCGTAGAAATCTACGGACCGGAATCCTCTGGTAAAACGACGCTGACTTTGCAGGTT
ATTGCATCAGCACAACGCGAAGGCAAAACCTGTGCGTTTATCGATGCAGAACACGCGCTGGATCCAGTCTATGCCCGTAA
ACTCGGTGTAGATATCGATAATCTTCTGTGTTCTCAGCCGGATACCGGTGAGCAGGCATTGGAAATCTGTGATGCGCTGG
CACGTTCTGGCGCCGTTGACGTTATCGTTGTCGACTCCGTTGCGGCACTGACACCGAAAGCGGAAATTGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCAATGCGTAAACTGGCCGGTAACCTTAAGCAGTCTAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCGGAAACCACTACCGGGGGTA
ACGCACTGAAGTTCTATGCGTCCGTTCGTCTGGATATCCGTCGTATCGGCGCAGTGAAAGATGGCGATAACGTGATCGGC
AGCGAAACCCGCGTGAAGGTTGTGAAGAATAAAATCGCCGCACCGTTCAAGCAGGCTGAATTCCAGATCCTTTACGGTGA
AGGTATCAACTTCTTTGGCGAGTTGGTTGACCTCGGCGTGAAAGAGAAGCTGATTGAAAAAGCAGGCGCCTGGTACAGCT
ACAATGGCGATAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGTTGAAAGAGAACCCAGCGGCAGCGAAAGAAATT
GAGAAGAAAGTGCGCGAACTCCTTCTCAGTAACCAGGATTCTAAACCTGACTTCGTTGTTGATGCCGCAGATGCTGAAGA
AACCAACCCAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.384

94.034

0.784
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.384

94.034

0.784
  recA Acinetobacter baylyi ADP1

71.143

99.432

0.707
  recA Acinetobacter baumannii D1279779

71.143

99.432

0.707
  recA Pseudomonas stutzeri DSM 10701

71.965

98.295

0.707
  recA Glaesserella parasuis strain SC1401

72.424

93.75

0.679
  recA Neisseria gonorrhoeae MS11

69.018

92.614

0.639
  recA Neisseria gonorrhoeae MS11

69.018

92.614

0.639
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.614

0.639
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Streptococcus mitis NCTC 12261

61.92

91.761

0.568
  recA Streptococcus mitis SK321

61.92

91.761

0.568
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.193

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

92.045

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.318

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

91.193

0.551