Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PCP49_RS06065 Genome accession   NZ_CP115244
Coordinates   1293862..1294485 (+) Length   207 a.a.
NCBI ID   WP_003116135.1    Uniprot ID   A0A0H2ZIF6
Organism   Pseudomonas aeruginosa strain F042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288862..1299485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP49_RS06050 (PCP49_06050) - 1289549..1292020 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PCP49_RS06055 (PCP49_06055) pilM 1292205..1293269 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP49_RS06060 (PCP49_06060) pilN 1293269..1293865 (+) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  PCP49_RS06065 (PCP49_06065) pilO 1293862..1294485 (+) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP49_RS06070 (PCP49_06070) comL/pilP 1294482..1295006 (+) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP49_RS06075 (PCP49_06075) pilQ 1295060..1297192 (+) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  PCP49_RS06080 (PCP49_06080) aroK 1297204..1297722 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PCP49_RS06085 (PCP49_06085) aroB 1297772..1298878 (+) 1107 WP_003146400.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22958.35 Da        Isoelectric Point: 4.9107

>NTDB_id=698292 PCP49_RS06065 WP_003116135.1 1293862..1294485(+) (pilO) [Pseudomonas aeruginosa strain F042]
MSLASSLESLRKIDVNDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLRDLQTQLEQQAAQEESLKQQFATKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPASPDNTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=698292 PCP49_RS06065 WP_003116135.1 1293862..1294485(+) (pilO) [Pseudomonas aeruginosa strain F042]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGACGTAAACGACCTCGATCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTCCGTGACT
TGCAAACACAGCTCGAACAGCAGGCTGCGCAAGAAGAATCGCTCAAGCAGCAATTTGCTACCAAAGCGTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAAGAGATGGAGGAGTCCTTCGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGTCTGGGCAGCGGCCTGGAGTTCGAGGAGATCAAGCTGCTCC
CTGAAGTCACTCAGCAGTTCTATATCGAGCTGCCGATCCAGATCAGCGTGGTAGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTTACCCTGCATGACTTCGAGATCAAGCCGGCTTCGCCCGATAACACCTC
GAAGCTGCGCATGAGCATCCTGGCCAAGACCTACCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

45.596

93.237

0.425
  pilO Acinetobacter baumannii D1279779

45.789

91.787

0.42
  comO/pilO Acinetobacter baylyi ADP1

43.617

90.821

0.396