Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NES82_RS16530 Genome accession   NZ_CP098777
Coordinates   3386088..3387152 (-) Length   354 a.a.
NCBI ID   WP_004387897.1    Uniprot ID   A0AAN5WZS8
Organism   Cronobacter sakazakii strain JXES-28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3381088..3392152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NES82_RS16515 (NES82_16520) csrA 3382329..3382514 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  NES82_RS16520 (NES82_16525) alaS 3382758..3385385 (-) 2628 WP_161574573.1 alanine--tRNA ligase -
  NES82_RS16525 (NES82_16530) recX 3385521..3386018 (-) 498 WP_105546625.1 recombination regulator RecX -
  NES82_RS16530 (NES82_16535) recA 3386088..3387152 (-) 1065 WP_004387897.1 recombinase RecA Machinery gene
  NES82_RS16535 (NES82_16540) pncC 3387241..3387738 (-) 498 WP_004387896.1 nicotinamide-nucleotide amidase -
  NES82_RS16540 (NES82_16545) mltB 3387879..3388961 (-) 1083 WP_004387895.1 lytic murein transglycosylase B -
  NES82_RS16545 (NES82_16550) - 3389077..3389799 (-) 723 WP_161574671.1 amino acid ABC transporter ATP-binding protein -
  NES82_RS16550 (NES82_16555) - 3389786..3390550 (-) 765 WP_004387893.1 amino acid ABC transporter permease -
  NES82_RS16555 (NES82_16560) - 3390624..3391391 (-) 768 WP_105578203.1 basic amino acid ABC transporter substrate-binding protein -
  NES82_RS16560 (NES82_16565) - 3391564..3391776 (+) 213 WP_007870378.1 KTSC domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38163.53 Da        Isoelectric Point: 4.7525

>NTDB_id=697890 NES82_RS16530 WP_004387897.1 3386088..3387152(-) (recA) [Cronobacter sakazakii strain JXES-28]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANATNFLKENKPMADEI
EKKLRDMLLNNQDSTPDFTVDDNDGGVEETNEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=697890 NES82_RS16530 WP_004387897.1 3386088..3387152(-) (recA) [Cronobacter sakazakii strain JXES-28]
ATGGCTATCGACGAAAACAAGCAGAAGGCGTTGGCGGCAGCACTCGGCCAGATTGAGAAGCAATTCGGCAAAGGCTCCAT
CATGCGTTTGGGTGAAGATCGCACCATGGATGTGGAAACGATCTCCACCGGCTCTCTCTCCCTGGACATCGCGCTGGGAG
CGGGCGGTCTGCCGATGGGGCGTATCGTGGAAATTTACGGCCCGGAATCTTCAGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCAGCACAGCGCGCGGGTAAAACCTGTGCGTTTATCGACGCAGAGCACGCGCTCGATCCCGTCTATGCCCGTAA
GCTCGGCGTAGATATCGATAACCTGCTCTGCTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGCGCGGTTGACGTGCTGGTTGTCGACTCCGTTGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGGGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAAAACTCCAA
CACCCTGCTTATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTTGGTAACCCGGAAACCACGACCGGCGGTA
ACGCGCTGAAATTCTACGCGTCTGTGCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAGGAAGTGGTAGGT
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAGTCGCTGCGCCGTTTAAACAGGCTGAGTTCCAGATCCTCTACGGTGA
AGGTATCAACTTCTACGGTGAGCTGGTTGACCTTGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGAGAAGATCGGCCAGGGTAAAGCGAACGCGACCAACTTCCTCAAAGAGAATAAGCCGATGGCTGACGAGATT
GAGAAGAAGCTGCGCGACATGCTGCTCAACAATCAGGACTCTACGCCTGACTTCACCGTCGATGATAACGACGGCGGCGT
TGAAGAAACCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.988

93.503

0.785
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.503

0.785
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baylyi ADP1

71.304

97.458

0.695
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baumannii D1279779

74.312

92.373

0.686
  recA Neisseria gonorrhoeae MS11

70.062

91.525

0.641
  recA Neisseria gonorrhoeae MS11

70.062

91.525

0.641
  recA Neisseria gonorrhoeae strain FA1090

70.062

91.525

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Helicobacter pylori strain NCTC11637

62.018

95.198

0.59
  recA Helicobacter pylori 26695

61.721

95.198

0.588
  recA Streptococcus mutans UA159

62.769

91.808

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.385

92.373

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.678

0.576
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.808

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.043

92.09

0.562