Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NDK47_RS12350 Genome accession   NZ_CP098755
Coordinates   2508018..2509076 (+) Length   352 a.a.
NCBI ID   WP_305883386.1    Uniprot ID   -
Organism   Brevibacillus ruminantium strain BB3-R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2503018..2514076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK47_RS12330 (NDK47_12330) rimO 2503045..2504391 (+) 1347 WP_251875258.1 30S ribosomal protein S12 methylthiotransferase RimO -
  NDK47_RS12335 (NDK47_12335) pgsA 2504392..2504967 (+) 576 WP_251875260.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NDK47_RS12340 (NDK47_12340) - 2505022..2506272 (+) 1251 WP_251875262.1 competence/damage-inducible protein A -
  NDK47_RS12345 (NDK47_12345) - 2506269..2507855 (+) 1587 WP_251875264.1 DEAD/DEAH box helicase -
  NDK47_RS12350 (NDK47_12350) recA 2508018..2509076 (+) 1059 WP_305883386.1 recombinase RecA Machinery gene
  NDK47_RS12355 (NDK47_12355) - 2509202..2509831 (+) 630 WP_251875268.1 RecX family transcriptional regulator -
  NDK47_RS12360 (NDK47_12360) rny 2510150..2511676 (+) 1527 WP_407653437.1 ribonuclease Y -
  NDK47_RS12365 (NDK47_12365) - 2511938..2512732 (+) 795 WP_251875272.1 TIGR00282 family metallophosphoesterase -
  NDK47_RS12370 (NDK47_12370) spoVS 2512849..2513109 (+) 261 WP_003385776.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37848.13 Da        Isoelectric Point: 4.8233

>NTDB_id=697723 NDK47_RS12350 WP_305883386.1 2508018..2509076(+) (recA) [Brevibacillus ruminantium strain BB3-R1]
MSDRRAALESALRQIEKQFGKGSIMKLGEMANVQVSTVSTGALAIDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDVIGSKT
KVKVVKNKVAPPFKTAEVDIMYGEGISKEGSILDIGAEIDVVQKSGAWYSFNDERLGQGRENAKIFLKENPEIANQIESK
VREYYSLNPGSVPTTEPVNDPEQDEEPMFDLD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=697723 NDK47_RS12350 WP_305883386.1 2508018..2509076(+) (recA) [Brevibacillus ruminantium strain BB3-R1]
TTGTCAGATCGTCGCGCCGCTTTGGAAAGTGCACTGCGTCAGATAGAAAAGCAATTTGGTAAGGGTTCCATCATGAAGCT
GGGGGAAATGGCTAACGTCCAGGTATCCACGGTATCAACCGGTGCCCTTGCGATTGATATCGCCCTGGGAGTGGGAGGAT
TCCCACGTGGTCGAATCATTGAAATTTACGGACCCGAGTCATCTGGTAAAACCACGGTCGCTCTCCACGCGATCGCAGAA
GTCCAGCGTCAGGGCGGTCAAGCCGCATTTATCGACGCGGAGCATGCACTTGATCCTGTATATGCTGCCAAGCTGGGTGT
AAATATTGAGGAACTGCTGCTGTCTCAGCCTGATACGGGTGAGCAGGCACTGGAAATTGCCGAGGCACTGGTACGCTCCG
GAGCTGTTGACATCATCGTTGTCGACTCGGTTGCTGCCCTGGTACCTAAAGCGGAAATCGAAGGGGAGATGGGCGACTCG
CACGTAGGTTTGCAAGCGCGTTTGATGTCCCAAGCACTTCGCAAACTCTCCGGTGCGATCAACAAATCCAAAACAATTGC
CATTTTCATTAACCAGCTCCGTGAAAAAGTAGGAGTCATGTTCGGGAACCCGGAAACGACACCAGGTGGACGAGCTTTGA
AATTCTACGCCAGCGTGCGCCTCGACGTACGGAAAGCGGAATCGATCAAAGTTGGCAACGACGTGATCGGAAGCAAAACA
AAAGTAAAAGTCGTGAAAAATAAAGTAGCTCCGCCGTTTAAGACAGCAGAAGTGGACATCATGTACGGAGAGGGAATCTC
CAAAGAGGGAAGCATTCTGGATATCGGTGCGGAGATTGATGTGGTACAAAAAAGTGGAGCATGGTATTCATTCAATGATG
AGCGCCTCGGTCAAGGTCGTGAAAATGCGAAGATCTTCTTGAAAGAGAATCCGGAAATTGCGAATCAGATTGAATCGAAG
GTTCGTGAGTACTATAGTCTGAACCCTGGTTCGGTTCCGACGACAGAGCCGGTCAATGATCCTGAACAAGACGAAGAACC
AATGTTTGATCTCGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.229

94.318

0.776
  recA Latilactobacillus sakei subsp. sakei 23K

70.623

95.739

0.676
  recA Streptococcus pneumoniae R6

67.33

100

0.673
  recA Streptococcus pneumoniae Rx1

67.33

100

0.673
  recA Streptococcus pneumoniae D39

67.33

100

0.673
  recA Streptococcus pneumoniae TIGR4

67.33

100

0.673
  recA Streptococcus mitis NCTC 12261

66.572

100

0.668
  recA Streptococcus pyogenes NZ131

65.537

100

0.659
  recA Streptococcus mitis SK321

69.069

94.602

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Streptococcus mutans UA159

68.693

93.466

0.642
  recA Ralstonia pseudosolanacearum GMI1000

67.278

92.898

0.625
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.295

98.295

0.622
  recA Glaesserella parasuis strain SC1401

62.609

98.011

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.749

92.898

0.611
  recA Vibrio cholerae strain A1552

65.749

92.898

0.611
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

92.898

0.588
  recA Helicobacter pylori 26695

59.942

97.159

0.582
  recA Acinetobacter baylyi ADP1

63.272

92.045

0.582
  recA Helicobacter pylori strain NCTC11637

59.649

97.159

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

91.193

0.58
  recA Acinetobacter baumannii D1279779

63.551

91.193

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568