Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NEA10_RS08365 Genome accession   NZ_CP098611
Coordinates   1940621..1941742 (-) Length   373 a.a.
NCBI ID   WP_252664855.1    Uniprot ID   -
Organism   Phormidium yuhuli AB48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935621..1946742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEA10_RS08350 (NEA10_08350) - 1936262..1937812 (+) 1551 WP_252664852.1 DUF5331 domain-containing protein -
  NEA10_RS08355 (NEA10_08355) - 1937850..1939259 (+) 1410 WP_252664853.1 ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N -
  NEA10_RS08360 (NEA10_08360) - 1939569..1940534 (+) 966 WP_252664854.1 protochlorophyllide reductase -
  NEA10_RS08365 (NEA10_08365) recA 1940621..1941742 (-) 1122 WP_252664855.1 recombinase RecA Machinery gene
  NEA10_RS08370 (NEA10_08370) xseA 1942025..1943281 (+) 1257 WP_252664858.1 exodeoxyribonuclease VII large subunit -
  NEA10_RS08375 (NEA10_08375) xseB 1943324..1943524 (+) 201 WP_252664860.1 exodeoxyribonuclease VII small subunit -
  NEA10_RS08380 (NEA10_08380) - 1943531..1944058 (+) 528 WP_252664861.1 GNAT family N-acetyltransferase -
  NEA10_RS08385 (NEA10_08385) - 1944253..1944573 (+) 321 WP_252664862.1 CU044_2847 family protein -
  NEA10_RS08390 (NEA10_08390) - 1944561..1945466 (+) 906 WP_252664863.1 trypsin-like peptidase domain-containing protein -
  NEA10_RS08395 (NEA10_08395) - 1945471..1946481 (+) 1011 WP_252664864.1 hypothetical protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39765.21 Da        Isoelectric Point: 5.3362

>NTDB_id=697034 NEA10_RS08365 WP_252664855.1 1940621..1941742(-) (recA) [Phormidium yuhuli AB48]
MATPITQNSEKQKALDMVLNQIERSFGKGAILRLGDSARMRVETIPSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVA
LHAIAETQKAGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGEMGLEIVDQLVRSVAVDLVVVDSVAALVPRAEIE
GDMGDIHVGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGISYGSPETTTGGNALKFYCSVRLDIRRIQTLKKGSD
EYGIRAKVKVAKNKIAPPFRIAEFDILFGQGISQVGCLLDLAEETGVIKRRGAWYSYDGDNIGQGRDNSVQYLKDNPEFA
ATIEEKVRQELAMGAMVSSNSVGKNGTSQDKGDDKSPVESSVGSNGKGKNEEE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=697034 NEA10_RS08365 WP_252664855.1 1940621..1941742(-) (recA) [Phormidium yuhuli AB48]
ATGGCGACCCCGATTACTCAGAACTCCGAAAAGCAGAAAGCTTTAGACATGGTGCTAAACCAGATTGAACGGTCCTTTGG
TAAAGGAGCGATTCTACGGTTAGGCGATTCAGCGCGGATGCGCGTTGAGACCATTCCCAGCGGCGCCTTAACCCTGGACT
TAGCCCTCGGCGGTGGACTCCCGAAAGGACGTGTGATTGAAATCTATGGCCCCGAGAGTTCCGGTAAAACCACCGTCGCC
CTTCATGCGATCGCCGAAACGCAAAAAGCTGGGGGAATTGCCGCCTTCGTGGATGCGGAACACGCCCTAGACCCCACCTA
TGCGGCGGCCTTGGGGGTGGATATTGAGAATCTCTTGGTCTCCCAACCGGACACCGGGGAGATGGGACTGGAAATTGTTG
ACCAACTGGTGCGTTCCGTCGCCGTGGATTTGGTGGTGGTTGACTCCGTCGCGGCCCTAGTTCCCCGCGCGGAAATTGAA
GGGGATATGGGAGATATCCATGTGGGCCTACAGGCGCGACTGATGAGTCAGGCCCTGCGAAAAATTACCGGTAATATCGG
CAAATCGGGCTGTACGGTCATTTTCCTGAACCAGTTACGGCAAAAAATCGGCATTAGTTACGGGAGTCCCGAAACCACGA
CTGGGGGAAATGCGCTCAAGTTCTACTGTTCCGTGCGCCTCGATATCCGTCGTATCCAAACCCTGAAAAAAGGCTCTGAT
GAATATGGGATTCGGGCTAAAGTCAAGGTGGCTAAAAACAAAATTGCACCGCCGTTCCGGATTGCTGAATTTGATATTCT
CTTTGGTCAGGGAATTTCCCAAGTTGGCTGCTTACTGGACTTAGCCGAGGAAACTGGGGTGATTAAGCGCCGGGGGGCTT
GGTATAGCTATGACGGAGATAATATCGGTCAGGGCCGAGATAATTCGGTGCAATATCTCAAGGATAACCCCGAGTTCGCC
GCCACCATTGAGGAAAAAGTCCGTCAAGAACTAGCCATGGGGGCGATGGTTTCTTCTAATAGTGTGGGTAAAAATGGGAC
GTCCCAAGATAAGGGCGATGATAAGAGTCCAGTGGAGTCCTCGGTGGGGAGTAACGGTAAGGGCAAAAACGAAGAAGAAT
AG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

60.399

94.102

0.568
  recA Acinetobacter baylyi ADP1

64

87.131

0.558
  recA Glaesserella parasuis strain SC1401

59.259

94.102

0.558
  recA Streptococcus mutans UA159

58.074

94.638

0.55
  recA Pseudomonas stutzeri DSM 10701

59.078

93.029

0.55
  recA Neisseria gonorrhoeae strain FA1090

62.848

86.595

0.544
  recA Neisseria gonorrhoeae MS11

62.848

86.595

0.544
  recA Neisseria gonorrhoeae MS11

62.848

86.595

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.88

93.566

0.542
  recA Ralstonia pseudosolanacearum GMI1000

62.154

87.131

0.542
  recA Bacillus subtilis subsp. subtilis str. 168

61.963

87.399

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

88.74

0.536
  recA Streptococcus mitis SK321

60

88.472

0.531
  recA Helicobacter pylori 26695

60.736

87.399

0.531
  recA Helicobacter pylori strain NCTC11637

60.736

87.399

0.531
  recA Streptococcus mitis NCTC 12261

59.697

88.472

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.308

87.131

0.525
  recA Vibrio cholerae strain A1552

60.308

87.131

0.525
  recA Latilactobacillus sakei subsp. sakei 23K

60.938

85.791

0.523
  recA Streptococcus pneumoniae R6

59.091

88.472

0.523
  recA Streptococcus pneumoniae TIGR4

59.091

88.472

0.523
  recA Streptococcus pneumoniae D39

59.091

88.472

0.523
  recA Streptococcus pneumoniae Rx1

59.091

88.472

0.523
  recA Streptococcus pyogenes NZ131

60.185

86.863

0.523
  recA Lactococcus lactis subsp. cremoris KW2

58.462

87.131

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.556

86.863

0.483