Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DOM78_RS01335 Genome accession   NZ_AP018446
Coordinates   258814..259848 (-) Length   344 a.a.
NCBI ID   WP_002957268.1    Uniprot ID   A0A2Z5V0K4
Organism   Helicobacter cinaedi strain P03D0629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 253814..264848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM78_RS01300 - 253818..254003 (-) 186 WP_014666311.1 hypothetical protein -
  DOM78_RS01305 - 254031..255014 (-) 984 WP_002957274.1 Gfo/Idh/MocA family protein -
  DOM78_RS01310 - 255007..256101 (-) 1095 WP_014666312.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  DOM78_RS01315 - 256119..256619 (-) 501 WP_014666313.1 shikimate kinase -
  DOM78_RS01320 - 256626..257237 (-) 612 WP_014666314.1 AMIN domain-containing protein -
  DOM78_RS01325 - 257234..257497 (-) 264 WP_014666315.1 hypothetical protein -
  DOM78_RS01330 eno 257507..258784 (-) 1278 WP_014666316.1 phosphopyruvate hydratase -
  DOM78_RS01335 recA 258814..259848 (-) 1035 WP_002957268.1 recombinase RecA Machinery gene
  DOM78_RS01340 - 259941..260798 (+) 858 WP_014666317.1 menaquinone biosynthesis family protein -
  DOM78_RS01345 - 260844..261911 (-) 1068 WP_002957266.1 AI-2E family transporter -
  DOM78_RS01350 - 262148..262342 (+) 195 WP_231997582.1 carbamoyltransferase N-terminal domain-containing protein -
  DOM78_RS01355 - 262437..264539 (+) 2103 WP_034548464.1 carbamoyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37524.27 Da        Isoelectric Point: 5.5428

>NTDB_id=69690 DOM78_RS01335 WP_002957268.1 258814..259848(-) (recA) [Helicobacter cinaedi strain P03D0629]
MVDERKQKAIELALKQIDKAFGKGALVRLGDKQVEKIDSISTGSLGLDMALGIGGVPKGRIIEIYGPESSGKTTLSLQIV
AECQKNGGICAFIDAEHALDVYYAKHLGVDTENLLVSQPDTGEQALEILETLTRSGAVDLVVIDSVAALTPKAEIEGDMG
DQHVGLQARLMSHALRKITGILHKMNTTLIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQNEQQIG
NRTKAKVVKNKVAPPFREAEFDIMFGEGISREGEIIDYGIKLDIIDKSGAWLSYNDKKLGQGRENAKLLLKEDKALAEEI
TLKIKEQIGAKDEIMPLPDEPEAE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=69690 DOM78_RS01335 WP_002957268.1 258814..259848(-) (recA) [Helicobacter cinaedi strain P03D0629]
ATGGTTGATGAAAGAAAGCAAAAAGCGATTGAACTTGCCCTAAAGCAGATTGATAAAGCCTTTGGCAAAGGGGCTTTGGT
GCGTTTGGGTGATAAGCAAGTAGAAAAGATAGATTCTATCTCAACAGGCTCTTTGGGGCTTGATATGGCACTTGGGATTG
GCGGTGTGCCTAAGGGGCGGATTATTGAAATCTATGGTCCTGAATCTAGTGGGAAAACGACTTTGAGTTTGCAAATTGTT
GCGGAATGTCAAAAAAATGGCGGAATCTGTGCGTTTATTGATGCAGAACACGCCCTTGATGTGTATTATGCCAAGCATTT
GGGCGTGGATACGGAAAATCTGCTTGTATCGCAACCAGATACGGGCGAACAAGCCTTAGAGATTCTAGAAACACTTACAC
GCAGTGGAGCGGTGGATTTGGTGGTGATTGACTCAGTGGCAGCCCTTACGCCAAAGGCGGAGATTGAAGGGGATATGGGC
GATCAGCACGTGGGGCTACAAGCAAGGCTTATGAGCCACGCTTTGCGTAAGATTACAGGAATCTTGCATAAGATGAATAC
GACTTTGATTTTTATCAATCAAATCCGTATGAAAATTGGCGTTATGGGCTATGGTAGTCCGGAAACGACAACGGGTGGTA
ATGCGTTGAAATTTTATGCGAGTGTAAGGATTGATGTCCGCCGCATTGCGACATTAAAGCAAAATGAGCAGCAGATTGGC
AATCGCACAAAAGCTAAGGTTGTGAAAAATAAAGTCGCACCGCCATTTAGAGAGGCGGAGTTTGACATTATGTTTGGAGA
GGGCATCAGTCGCGAAGGCGAGATTATTGACTATGGCATTAAGCTTGACATTATTGATAAAAGTGGTGCGTGGCTTAGCT
ACAACGATAAAAAGCTTGGACAAGGGCGAGAGAATGCAAAACTGCTCTTAAAAGAAGATAAGGCATTGGCTGAAGAAATT
ACGCTTAAGATTAAAGAGCAGATTGGGGCGAAAGATGAGATTATGCCACTGCCTGATGAGCCAGAAGCTGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5V0K4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

90.588

98.837

0.895
  recA Helicobacter pylori strain NCTC11637

90.294

98.837

0.892
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.354

95.349

0.747
  recA Neisseria gonorrhoeae MS11

67.29

93.314

0.628
  recA Neisseria gonorrhoeae MS11

67.29

93.314

0.628
  recA Neisseria gonorrhoeae strain FA1090

67.29

93.314

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

66.873

93.895

0.628
  recA Acinetobacter baylyi ADP1

61.85

100

0.622
  recA Acinetobacter baumannii D1279779

64.526

95.058

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

97.384

0.613
  recA Ralstonia pseudosolanacearum GMI1000

67.093

90.988

0.61
  recA Pseudomonas stutzeri DSM 10701

63.303

95.058

0.602
  recA Vibrio cholerae strain A1552

62.691

95.058

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.691

95.058

0.596
  recA Glaesserella parasuis strain SC1401

61.89

95.349

0.59
  recA Streptococcus pyogenes NZ131

61.027

96.221

0.587
  recA Lactococcus lactis subsp. cremoris KW2

60.542

96.512

0.584
  recA Streptococcus mutans UA159

59.819

96.221

0.576
  recA Streptococcus pneumoniae Rx1

59.819

96.221

0.576
  recA Streptococcus pneumoniae D39

59.819

96.221

0.576
  recA Streptococcus pneumoniae R6

59.819

96.221

0.576
  recA Streptococcus pneumoniae TIGR4

59.819

96.221

0.576
  recA Streptococcus mitis NCTC 12261

59.517

96.221

0.573
  recA Streptococcus mitis SK321

59.517

96.221

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.267

100

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

94.767

0.555

Multiple sequence alignment