Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NDQ71_RS15290 Genome accession   NZ_CP098523
Coordinates   3241189..3242235 (+) Length   348 a.a.
NCBI ID   WP_192542870.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. KG3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3236189..3247235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ71_RS15275 (NDQ71_15260) rpoS 3236957..3237952 (+) 996 WP_064665478.1 RNA polymerase sigma factor RpoS -
  NDQ71_RS15280 (NDQ71_15265) mutS 3238040..3240610 (-) 2571 WP_301561801.1 DNA mismatch repair protein MutS -
  NDQ71_RS15285 (NDQ71_15270) - 3240632..3241120 (+) 489 WP_192542871.1 CinA family protein -
  NDQ71_RS15290 (NDQ71_15275) recA 3241189..3242235 (+) 1047 WP_192542870.1 recombinase RecA Machinery gene
  NDQ71_RS15295 (NDQ71_15280) - 3242435..3243628 (-) 1194 WP_301561802.1 DcaP family trimeric outer membrane transporter -
  NDQ71_RS15300 (NDQ71_15285) acs 3243933..3245873 (+) 1941 WP_301561803.1 acetate--CoA ligase -
  NDQ71_RS15305 (NDQ71_15290) - 3245971..3246624 (+) 654 WP_064665485.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37599.25 Da        Isoelectric Point: 5.1735

>NTDB_id=696613 NDQ71_RS15290 WP_192542870.1 3241189..3242235(+) (recA) [Pseudoalteromonas sp. KG3]
MNDNKQKALDAALSQIERQFGKGSIMKLGDNKALDIDAVSTGSLGIDIALGIGGLPMGRIVEIYGPESSGKTTLTLQVIA
EAQKEGKTCAFVDAEHALDPIYAQKLGVNIDELLVSQPDTGEQALEICDMLVRSSAVDVVVVDSVAALTPKAEIEGDMGD
SHMGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFIIMYGEGISKHGELIDLGVKHKLVEKAGAWYSYNGNKVGQGKSNSIKFLKENPEISNEIEG
KLRDMLLLKATIKPDDIEDALLADDAEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=696613 NDQ71_RS15290 WP_192542870.1 3241189..3242235(+) (recA) [Pseudoalteromonas sp. KG3]
ATGAACGATAACAAACAAAAAGCGTTGGACGCTGCTTTATCTCAAATTGAGCGTCAATTTGGTAAAGGCTCAATCATGAA
ATTGGGTGATAACAAAGCGTTAGATATTGACGCTGTATCAACGGGCTCTCTGGGCATTGATATCGCATTAGGCATAGGTG
GTTTACCTATGGGACGTATCGTTGAAATATATGGTCCTGAATCATCAGGTAAAACCACGCTAACATTACAAGTTATTGCT
GAAGCACAAAAAGAAGGTAAAACCTGCGCATTCGTTGATGCTGAGCACGCACTTGACCCAATTTACGCACAAAAATTAGG
CGTAAATATTGATGAGTTATTAGTTTCACAACCAGATACCGGTGAACAAGCACTTGAAATTTGCGACATGTTAGTTCGCT
CAAGCGCGGTTGACGTGGTTGTGGTCGACTCGGTTGCTGCACTTACACCAAAAGCTGAGATTGAAGGCGACATGGGCGAT
TCGCACATGGGTCTACAAGCACGTTTAATGTCACAAGCATTACGTAAGCTAACTGGTAATATCAAACGCTCTAACACTTT
ATGTATTTTCATTAACCAAATCCGTATGAAAATTGGTGTTATGTTTGGTAACCCTGAAACCACCACCGGCGGTAACGCAC
TTAAATTCTACGCGTCAGTACGTTTAGATATTCGTCGTATCGGCTCTGTTAAAGAGGGCGATGAAGTGGTGGGTAACGAA
ACCCGGGTTAAAGTGGTGAAAAACAAAGTTGCTCCACCGTTTAAACAAGCTGAATTTATTATCATGTACGGTGAAGGTAT
CTCTAAACATGGCGAGCTAATTGACTTAGGTGTTAAACATAAGTTGGTTGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GTAATAAAGTTGGTCAAGGTAAGTCTAACTCAATCAAGTTCTTAAAAGAGAACCCTGAGATTTCAAATGAGATTGAAGGT
AAGTTACGTGACATGTTGTTATTAAAAGCAACTATCAAGCCTGACGATATTGAAGATGCTTTACTAGCAGATGATGCTGA
GCTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

75.852

100

0.767
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.852

100

0.767
  recA Pseudomonas stutzeri DSM 10701

74.783

99.138

0.741
  recA Acinetobacter baylyi ADP1

75.831

95.115

0.721
  recA Acinetobacter baumannii D1279779

73.746

97.414

0.718
  recA Glaesserella parasuis strain SC1401

74.03

96.264

0.713
  recA Neisseria gonorrhoeae MS11

73.765

93.103

0.687
  recA Neisseria gonorrhoeae MS11

73.765

93.103

0.687
  recA Neisseria gonorrhoeae strain FA1090

73.765

93.103

0.687
  recA Ralstonia pseudosolanacearum GMI1000

74.598

89.368

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.066

95.69

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

67.913

92.241

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.977

0.612
  recA Helicobacter pylori strain NCTC11637

62.985

96.264

0.606
  recA Helicobacter pylori 26695

62.985

96.264

0.606
  recA Streptococcus pneumoniae TIGR4

63.158

92.816

0.586
  recA Streptococcus pneumoniae Rx1

63.158

92.816

0.586
  recA Streptococcus pneumoniae D39

63.158

92.816

0.586
  recA Streptococcus pneumoniae R6

63.158

92.816

0.586
  recA Streptococcus mitis NCTC 12261

62.848

92.816

0.583
  recA Streptococcus mitis SK321

62.539

92.816

0.58
  recA Streptococcus mutans UA159

61.468

93.966

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.009

91.667

0.578
  recA Streptococcus pyogenes NZ131

60.856

93.966

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

92.241

0.563
  recA Lactococcus lactis subsp. cremoris KW2

59.133

92.816

0.549