Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   UNDYM_RS02935 Genome accession   NZ_AP018441
Coordinates   626899..627939 (+) Length   346 a.a.
NCBI ID   WP_162039694.1    Uniprot ID   A0A809QCZ9
Organism   Undibacterium sp. YM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621899..632939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDYM_RS02920 - 623126..623335 (+) 210 WP_162039692.1 hypothetical protein -
  UNDYM_RS02925 - 623701..625974 (+) 2274 WP_162039693.1 hypothetical protein -
  UNDYM_RS02930 (UNDYM_0591) - 626092..626484 (+) 393 WP_370529433.1 helix-turn-helix domain-containing protein -
  UNDYM_RS02935 (UNDYM_0594) recA 626899..627939 (+) 1041 WP_162039694.1 recombinase RecA Machinery gene
  UNDYM_RS02940 (UNDYM_0595) recX 628055..628513 (+) 459 WP_162039695.1 recombination regulator RecX -
  UNDYM_RS02945 - 629056..629340 (-) 285 WP_162039696.1 hypothetical protein -
  UNDYM_RS02950 (UNDYM_0596) - 629521..630105 (+) 585 WP_162039697.1 DUF2889 domain-containing protein -
  UNDYM_RS02955 (UNDYM_0597) sucC 630137..631321 (+) 1185 WP_255431543.1 ADP-forming succinate--CoA ligase subunit beta -
  UNDYM_RS02960 (UNDYM_0598) sucD 631340..632221 (+) 882 WP_110255493.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37006.28 Da        Isoelectric Point: 5.0621

>NTDB_id=69623 UNDYM_RS02935 WP_162039694.1 626899..627939(+) (recA) [Undibacterium sp. YM2]
MDDKKPENASEKAKALAAALAQIEKQFGKGSVMRMADGEVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQAIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLSDLLISQPDTGEQALEITDALVRSGSVDLVVIDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVVGNETKVKVVKNKVAPPFKEAHFDIMYGEGTSREGEILDLAADAKIIEKAGAWYSYNGERIGQGKDNARTYLKERP
ELSFEIENKVREHLGVPLLSAVATAE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=69623 UNDYM_RS02935 WP_162039694.1 626899..627939(+) (recA) [Undibacterium sp. YM2]
ATGGACGATAAGAAACCAGAAAATGCCTCAGAAAAAGCAAAGGCACTTGCAGCAGCGCTGGCACAGATAGAAAAGCAGTT
TGGTAAAGGTTCGGTCATGCGTATGGCCGACGGTGAAGTGGTGGAAGAGGTGCAGGTTGTTTCTACTGGTTCTCTGGGCC
TGGATATCGCGCTGGGCGTCGGTGGCTTGCCACGTGGCCGTGTCGTTGAAATTTATGGCCCTGAATCTTCTGGTAAAACC
ACATTGACGCTGCAGGCGATTGCTGAAATGCAAAAACTGGGTGGTACTTGTGCGTTTATCGATGCTGAGCATGCTTTGGA
CGTTGGTTACGCTCAAAAACTGGGTGTGAATCTGTCTGATTTGCTGATTTCCCAGCCTGACACAGGTGAGCAAGCGCTGG
AAATTACCGATGCATTGGTGCGTTCTGGTAGTGTCGATCTGGTGGTTATTGACTCGGTGGCAGCATTGACGCCACGTGCC
GAGATTGAAGGCGATATGGGCGATTCTTTGCCTGGTTTGCAAGCGCGTCTGATGTCCCAGGCTTTGCGTAAGCTGACTGG
CAGTATCAAACGTACTAATACTCTGGTGATTTTTATTAACCAGATCCGTATGAAGATTGGTGTCATGTTTGGTAGCCCAG
AAACGACAACTGGCGGTAATGCGCTGAAGTTTTATGCTTCCGTACGTCTGGATATCCGCCGCACTGGCTCTATCAAGTCT
GGTGATGAAGTGGTGGGGAATGAAACCAAGGTCAAGGTAGTCAAGAATAAGGTGGCGCCGCCATTCAAGGAAGCACACTT
TGATATCATGTATGGCGAGGGTACTTCACGCGAAGGTGAAATTCTGGATCTGGCAGCCGATGCCAAGATCATAGAAAAAG
CTGGTGCCTGGTATAGCTATAACGGTGAGCGTATCGGTCAGGGTAAGGACAATGCACGTACTTATTTGAAAGAACGTCCT
GAGCTGTCATTTGAAATTGAAAACAAGGTACGTGAACATCTGGGCGTGCCTTTGTTGTCAGCGGTAGCGACGGCTGAGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809QCZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.259

93.642

0.789
  recA Neisseria gonorrhoeae strain FA1090

72.727

95.376

0.694
  recA Neisseria gonorrhoeae MS11

72.727

95.376

0.694
  recA Neisseria gonorrhoeae MS11

72.727

95.376

0.694
  recA Acinetobacter baylyi ADP1

71.257

96.532

0.688
  recA Pseudomonas stutzeri DSM 10701

70.871

96.243

0.682
  recA Acinetobacter baumannii D1279779

72.446

93.353

0.676
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.472

94.22

0.673
  recA Vibrio cholerae strain A1552

71.472

94.22

0.673
  recA Glaesserella parasuis strain SC1401

71.605

93.642

0.671
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.389

95.087

0.65
  recA Streptococcus mitis NCTC 12261

63.343

98.555

0.624
  recA Streptococcus mitis SK321

63.343

98.555

0.624
  recA Streptococcus pneumoniae R6

65.06

95.954

0.624
  recA Streptococcus pneumoniae D39

65.06

95.954

0.624
  recA Streptococcus pneumoniae Rx1

65.06

95.954

0.624
  recA Streptococcus pneumoniae TIGR4

65.06

95.954

0.624
  recA Streptococcus pyogenes NZ131

65.152

95.376

0.621
  recA Lactococcus lactis subsp. cremoris KW2

61.095

100

0.613
  recA Streptococcus mutans UA159

64.048

95.665

0.613
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.724

94.22

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

94.509

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

64.22

94.509

0.607
  recA Helicobacter pylori 26695

64.11

94.22

0.604
  recA Helicobacter pylori strain NCTC11637

63.804

94.22

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

94.22

0.601

Multiple sequence alignment