Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NDJ97_RS17065 | Genome accession | NZ_CP098486 |
| Coordinates | 3563626..3564684 (-) | Length | 352 a.a. |
| NCBI ID | WP_022649140.1 | Uniprot ID | A0A330DB80 |
| Organism | Enterobacter hormaechei subsp. hormaechei strain ECC33 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3531255..3564684 | 3563626..3564684 | within | 0 |
Gene organization within MGE regions
Location: 3531255..3564684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDJ97_RS16880 (NDJ97_16875) | - | 3531255..3532835 (-) | 1581 | WP_022649120.1 | hypothetical protein | - |
| NDJ97_RS16885 (NDJ97_16880) | - | 3532847..3534262 (-) | 1416 | WP_022649121.1 | DUF1116 domain-containing protein | - |
| NDJ97_RS16890 (NDJ97_16885) | fdrA | 3534262..3535803 (-) | 1542 | WP_023330176.1 | acyl-CoA synthetase FdrA | - |
| NDJ97_RS16895 (NDJ97_16890) | - | 3535912..3536517 (-) | 606 | WP_022649123.1 | ankyrin repeat domain-containing protein | - |
| NDJ97_RS16900 (NDJ97_16895) | - | 3536838..3537767 (+) | 930 | WP_022649124.1 | LysR substrate-binding domain-containing protein | - |
| NDJ97_RS16905 (NDJ97_16900) | - | 3537764..3537922 (-) | 159 | WP_003862203.1 | YqaE/Pmp3 family membrane protein | - |
| NDJ97_RS16910 (NDJ97_16905) | - | 3538102..3538620 (+) | 519 | WP_022649125.1 | rhodanese family protein | - |
| NDJ97_RS16915 (NDJ97_16910) | - | 3538703..3538882 (+) | 180 | WP_006811690.1 | hypothetical protein | - |
| NDJ97_RS16920 (NDJ97_16915) | stpA | 3538920..3539324 (-) | 405 | WP_022649126.1 | DNA-binding protein StpA | - |
| NDJ97_RS16925 (NDJ97_16920) | alaE | 3539822..3540271 (+) | 450 | WP_022649127.1 | L-alanine exporter AlaE | - |
| NDJ97_RS16930 (NDJ97_16925) | - | 3540304..3540648 (-) | 345 | WP_006811693.1 | DUF2002 family protein | - |
| NDJ97_RS16935 (NDJ97_16930) | - | 3540807..3541133 (+) | 327 | WP_017382769.1 | DUF883 domain-containing protein | - |
| NDJ97_RS16940 (NDJ97_16935) | nrdH | 3541377..3541616 (+) | 240 | WP_017382770.1 | glutaredoxin-like protein NrdH | - |
| NDJ97_RS16945 (NDJ97_16940) | nrdI | 3541613..3542023 (+) | 411 | WP_022649128.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| NDJ97_RS16950 (NDJ97_16945) | nrdE | 3541996..3544140 (+) | 2145 | WP_022649129.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| NDJ97_RS16955 (NDJ97_16950) | nrdF | 3544150..3545109 (+) | 960 | WP_022649130.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| NDJ97_RS16960 (NDJ97_16955) | proV | 3545443..3546645 (+) | 1203 | WP_022649131.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| NDJ97_RS16965 (NDJ97_16960) | proW | 3546638..3547702 (+) | 1065 | WP_022649132.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| NDJ97_RS16970 (NDJ97_16965) | proX | 3547712..3548707 (+) | 996 | WP_017382774.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| NDJ97_RS16975 (NDJ97_16970) | - | 3548917..3550101 (+) | 1185 | WP_017692795.1 | MFS transporter | - |
| NDJ97_RS16980 (NDJ97_16975) | emrR | 3550416..3550946 (+) | 531 | WP_017694792.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| NDJ97_RS16985 (NDJ97_16980) | emrA | 3551075..3552247 (+) | 1173 | WP_063153564.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| NDJ97_RS16990 (NDJ97_16985) | emrB | 3552264..3553811 (+) | 1548 | WP_022649134.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| NDJ97_RS16995 (NDJ97_16990) | - | 3553896..3555002 (-) | 1107 | WP_226860881.1 | DDE-type integrase/transposase/recombinase | - |
| NDJ97_RS17000 (NDJ97_16995) | - | 3555313..3555456 (+) | 144 | Protein_3332 | hypothetical protein | - |
| NDJ97_RS17005 (NDJ97_17000) | luxS | 3555518..3556033 (-) | 516 | WP_003862180.1 | S-ribosylhomocysteine lyase | - |
| NDJ97_RS17010 (NDJ97_17005) | gshA | 3556186..3557730 (-) | 1545 | WP_022649137.1 | glutamate--cysteine ligase | - |
| NDJ97_RS17015 (NDJ97_17010) | - | 3557814..3558242 (-) | 429 | WP_017692791.1 | YqaA family protein | - |
| NDJ97_RS17020 (NDJ97_17015) | yqaB | 3558239..3558805 (-) | 567 | WP_022649138.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| NDJ97_RS17050 (NDJ97_17045) | csrA | 3559871..3560056 (-) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| NDJ97_RS17055 (NDJ97_17050) | alaS | 3560298..3562925 (-) | 2628 | WP_022649139.1 | alanine--tRNA ligase | - |
| NDJ97_RS17060 (NDJ97_17055) | recX | 3563057..3563557 (-) | 501 | WP_017382782.1 | recombination regulator RecX | - |
| NDJ97_RS17065 (NDJ97_17060) | recA | 3563626..3564684 (-) | 1059 | WP_022649140.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37777.21 Da Isoelectric Point: 4.8095
>NTDB_id=696223 NDJ97_RS17065 WP_022649140.1 3563626..3564684(-) (recA) [Enterobacter hormaechei subsp. hormaechei strain ECC33]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPDFVVDGADAEETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPDFVVDGADAEETNEDF
Nucleotide
Download Length: 1059 bp
>NTDB_id=696223 NDJ97_RS17065 WP_022649140.1 3563626..3564684(-) (recA) [Enterobacter hormaechei subsp. hormaechei strain ECC33]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACTGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCCTCGGGTAAAACCACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCCCTGGAAATTTGTGACGCGCTGG
CGCGCTCAGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCAGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGGGATAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAGCAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACTGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCCTCGGGTAAAACCACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCCCTGGAAATTTGTGACGCGCTGG
CGCGCTCAGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCAGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGGGATAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAGCAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA
Similar proteins
Only experimentally validated proteins are listed.