Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NDN13_RS02290 Genome accession   NZ_CP098480
Coordinates   473505..474551 (-) Length   348 a.a.
NCBI ID   WP_004652989.1    Uniprot ID   A0A653KBA4
Organism   Acinetobacter sp. C32I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 468505..479551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS02260 (NDN13_02260) - 468721..469176 (+) 456 WP_251117014.1 phasin family protein -
  NDN13_RS02265 (NDN13_02265) - 469345..469617 (+) 273 WP_004639426.1 HU family DNA-binding protein -
  NDN13_RS02270 (NDN13_02270) - 469757..471628 (+) 1872 WP_251117015.1 SurA N-terminal domain-containing protein -
  NDN13_RS02275 (NDN13_02275) - 471691..472548 (-) 858 WP_251117016.1 YbgF trimerization domain-containing protein -
  NDN13_RS02285 (NDN13_02285) - 472980..473462 (-) 483 WP_251117017.1 regulatory protein RecX -
  NDN13_RS02290 (NDN13_02290) recA 473505..474551 (-) 1047 WP_004652989.1 recombinase RecA Machinery gene
  NDN13_RS02295 (NDN13_02295) - 474721..475149 (-) 429 WP_251117018.1 S4 domain-containing protein -
  NDN13_RS02300 (NDN13_02300) - 475133..475834 (-) 702 WP_251117019.1 HAD-IA family hydrolase -
  NDN13_RS02305 (NDN13_02305) - 475846..476703 (+) 858 WP_251117020.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NDN13_RS02310 (NDN13_02310) - 476755..477486 (+) 732 WP_241272025.1 phosphoglycerate mutase family protein -
  NDN13_RS02315 (NDN13_02315) - 477634..478050 (-) 417 WP_251117021.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37996.39 Da        Isoelectric Point: 5.0470

>NTDB_id=696140 NDN13_RS02290 WP_004652989.1 473505..474551(-) (recA) [Acinetobacter sp. C32I]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENAQMAQEIEK
LIREQLLTKNKPAENTDIEEEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=696140 NDN13_RS02290 WP_004652989.1 473505..474551(-) (recA) [Acinetobacter sp. C32I]
ATGGATGATAATAAAAGTAAGGCGTTACAAGCTGCGTTGAGCCAGATTGAAAAACAATTTGGTAAAAATACAGTCATGCG
CTTAGGTGATAACACCGTACAAGCAGTTGAAGCTGTTTCTACGGGTTCTTTAACACTCGATATCGCATTAGGGATTGGCG
GATTACCTAAAGGCCGTATCATTGAAATTTACGGTCCTGAATCATCAGGTAAAACGACCATGACATTGCAGGCCATTGCT
CAATGTCAAAAGAATGGCGGTACCTGTGCCTTTATCGATGCCGAACATGCATTAGACCCTGAATACGCACGTAAGCTCGG
TGTAGATATTGATAACCTTTTGGTTTCACAACCTGACCACGGTGAGCAAGCACTCGAAATTGCGGATATGTTGGTACGCT
CAGGCGCAATCGATTTAATCGTTGTCGACTCTGTTGCAGCATTAACCCCGAAAGCCGAAATTGAAGGCGAAATGGGTGAC
TCACATATGGGCTTGCAAGCACGTTTAATGAGTCAGGCTCTGCGTAAAATCACAGGTAATGCGAAACGCTCTAACTGTAT
GGTGATTTTCATTAACCAAATCCGTATGAAGATTGGCGTCATGTTTGGTAGCCCAGAAACTACAACTGGCGGTAACGCAC
TTAAATTCTATGCTTCTGTACGTTTAGATATCCGTCGTATCGGTCAAGTAAAAGAAGGCGACGAAATTACGGGTAATGAA
ACACGTGTTAAAGTTGTGAAAAACAAAATGGCGCCTCCGTTCAAAGAAGCGGTATTCCAGATCATGTATGGTAAAGGGAC
TAACCAACTCGGTGAATTGGTTGATCTTGCAGTTCAACAAGATATCGTACAAAAAGCCGGTGCTTGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAATAATGTGATTCGTCATTTTGAAGAGAATGCACAAATGGCGCAAGAAATTGAAAAG
CTGATTCGTGAACAACTTCTCACCAAGAACAAACCCGCTGAAAACACAGACATCGAAGAAGAAGAACCCGATTTCTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.197

99.425

0.917
  recA Acinetobacter baylyi ADP1

91.404

100

0.917
  recA Pseudomonas stutzeri DSM 10701

72.093

98.851

0.713
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Ralstonia pseudosolanacearum GMI1000

68.657

96.264

0.661
  recA Glaesserella parasuis strain SC1401

70.37

93.103

0.655
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.103

0.641
  recA Helicobacter pylori strain NCTC11637

62.319

99.138

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.682

98.563

0.618
  recA Helicobacter pylori 26695

62.029

99.138

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.977

0.609
  recA Streptococcus mutans UA159

58.333

100

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.127

90.517

0.58
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.529

0.578
  recA Streptococcus pneumoniae R6

61.656

93.678

0.578
  recA Streptococcus pneumoniae Rx1

61.656

93.678

0.578
  recA Streptococcus pneumoniae D39

61.656

93.678

0.578
  recA Streptococcus pneumoniae TIGR4

61.656

93.678

0.578
  recA Streptococcus mitis NCTC 12261

61.043

93.678

0.572
  recA Streptococcus mitis SK321

61.043

93.678

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.701

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552