Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NDN11_RS11145 Genome accession   NZ_CP098478
Coordinates   2427271..2428317 (+) Length   348 a.a.
NCBI ID   WP_167249439.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2422271..2433317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS11125 (NDN11_11120) - 2424336..2425067 (-) 732 WP_167249447.1 phosphoglycerate mutase family protein -
  NDN11_RS11130 (NDN11_11125) - 2425119..2425976 (-) 858 WP_251109657.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NDN11_RS11135 (NDN11_11130) - 2425988..2426689 (+) 702 WP_251109658.1 HAD-IA family hydrolase -
  NDN11_RS11140 (NDN11_11135) - 2426673..2427101 (+) 429 WP_167249441.1 S4 domain-containing protein -
  NDN11_RS11145 (NDN11_11140) recA 2427271..2428317 (+) 1047 WP_167249439.1 recombinase RecA Machinery gene
  NDN11_RS11150 (NDN11_11145) - 2428364..2428846 (+) 483 WP_167249437.1 regulatory protein RecX -
  NDN11_RS11160 (NDN11_11155) - 2429277..2430140 (+) 864 WP_251109659.1 YbgF trimerization domain-containing protein -
  NDN11_RS11165 (NDN11_11160) - 2430202..2432073 (-) 1872 WP_167249433.1 SurA N-terminal domain-containing protein -
  NDN11_RS11170 (NDN11_11165) - 2432213..2432485 (-) 273 WP_004639426.1 HU family DNA-binding protein -
  NDN11_RS11175 (NDN11_11170) - 2432654..2433109 (-) 456 WP_004807968.1 phasin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37985.36 Da        Isoelectric Point: 5.0470

>NTDB_id=696076 NDN11_RS11145 WP_167249439.1 2427271..2428317(+) (recA) [Acinetobacter sp. C26M]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENSQMAQEIEK
LIREQLLTKNKPAESTDIEEEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=696076 NDN11_RS11145 WP_167249439.1 2427271..2428317(+) (recA) [Acinetobacter sp. C26M]
ATGGATGATAATAAAAGTAAGGCGTTACAAGCTGCATTAAGTCAAATTGAAAAGCAATTTGGCAAAAATACAGTGATGCG
CTTAGGTGATAACACTGTACAAGCAGTTGAAGCTGTATCTACAGGTTCTTTAACACTTGATATCGCATTAGGGATTGGCG
GATTACCTAAAGGCCGTATCATCGAAATTTACGGTCCTGAATCTTCAGGTAAAACGACCATGACACTGCAAGCAATTGCG
CAATGTCAAAAAAATGGCGGTACATGTGCCTTTATCGATGCCGAACATGCATTAGATCCAGAATACGCACGTAAACTCGG
TGTTGATATTGACAATCTATTGGTGTCACAACCAGATCACGGTGAACAAGCGCTCGAAATCGCTGACATGTTGGTTCGCT
CAGGTGCAATTGATCTGATCGTTGTCGACTCTGTTGCAGCATTGACCCCGAAAGCCGAAATTGAAGGCGAAATGGGTGAC
TCACATATGGGCTTACAAGCACGATTAATGAGTCAGGCACTTCGTAAAATTACCGGTAATGCTAAGCGTTCAAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAGCCCTGAAACCACAACGGGTGGTAACGCAC
TTAAATTCTACGCTTCAGTACGTTTAGATATTCGTCGTATTGGTCAAGTAAAAGAAGGCGACGAAATCACAGGTAACGAA
ACGCGCGTTAAAGTTGTAAAAAACAAAATGGCGCCTCCGTTCAAAGAAGCTGTGTTCCAAATCATGTATGGTAAAGGGAC
TAACCAGCTCGGTGAATTGGTTGATCTCGCAGTTCAACAAGATATCGTACAAAAAGCAGGTGCTTGGTATTCATATCAAG
GCAATAAAATTGGTCAAGGTAAGAATAACGTGATTCGTCACTTTGAAGAGAATTCACAAATGGCTCAGGAAATTGAAAAG
CTGATTCGTGAACAACTTCTCACCAAGAACAAACCAGCCGAAAGTACAGACATTGAAGAAGAAGAACCAGATTTCTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.197

99.425

0.917
  recA Acinetobacter baylyi ADP1

91.404

100

0.917
  recA Pseudomonas stutzeri DSM 10701

72.093

98.851

0.713
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Ralstonia pseudosolanacearum GMI1000

68.358

96.264

0.658
  recA Glaesserella parasuis strain SC1401

70.37

93.103

0.655
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.103

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98.563

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.977

0.609
  recA Helicobacter pylori strain NCTC11637

64.526

93.966

0.606
  recA Helicobacter pylori 26695

64.22

93.966

0.603
  recA Streptococcus mutans UA159

58.333

100

0.583
  recA Streptococcus mitis SK321

60.237

96.839

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.127

90.517

0.58
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.529

0.578
  recA Streptococcus pneumoniae D39

61.656

93.678

0.578
  recA Streptococcus pneumoniae Rx1

61.656

93.678

0.578
  recA Streptococcus pneumoniae R6

61.656

93.678

0.578
  recA Streptococcus pneumoniae TIGR4

61.656

93.678

0.578
  recA Streptococcus mitis NCTC 12261

61.043

93.678

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.701

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552