Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NC851_RS03855 Genome accession   NZ_CP098464
Coordinates   742788..743834 (+) Length   348 a.a.
NCBI ID   WP_003688695.1    Uniprot ID   Q5F8M9
Organism   Neisseria gonorrhoeae strain 10269     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 737788..748834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC851_RS03835 (NC851_11715) - 738122..738562 (-) 441 WP_267736602.1 hypothetical protein -
  NC851_RS03840 (NC851_03795) dinB 738661..739719 (+) 1059 WP_003688698.1 DNA polymerase IV -
  NC851_RS03845 (NC851_03800) rep 739789..741804 (-) 2016 WP_012503651.1 DNA helicase Rep -
  NC851_RS03850 (NC851_03805) aroD 741824..742588 (-) 765 WP_003688696.1 type I 3-dehydroquinate dehydratase -
  NC851_RS03855 (NC851_03810) recA 742788..743834 (+) 1047 WP_003688695.1 recombinase RecA Machinery gene
  NC851_RS03860 (NC851_03815) - 744487..744822 (-) 336 WP_003688693.1 YbaB/EbfC family nucleoid-associated protein -
  NC851_RS03865 (NC851_03820) dnaX 744903..747026 (-) 2124 WP_003695312.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37642.87 Da        Isoelectric Point: 4.8330

>NTDB_id=695780 NC851_RS03855 WP_003688695.1 742788..743834(+) (recA) [Neisseria gonorrhoeae strain 10269]
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAV
AQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGN
ETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEISDEID
AKIRALNGVEMHITEGTQDETDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=695780 NC851_RS03855 WP_003688695.1 742788..743834(+) (recA) [Neisseria gonorrhoeae strain 10269]
ATGTCAGACGACAAAAGCAAAGCCCTTGCCGCCGCACTGGCGCAAATCGAAAAAAGTTTCGGCAAAGGCGCCATCATGAA
AATGGACGGCAGCCAGCAGGAAGAAAACCTCGAAGTCATTTCCACCGGATCGCTCGGATTAGACCTCGCCCTCGGAGTCG
GCGGCCTGCCGCGCGGGCGCATCGTCGAAATCTTCGGCCCCGAATCCTCCGGCAAAACCACACTCTGCCTCGAAGCCGTC
GCCCAATGCCAGAAAAACGGCGGCGTGTGCGCCTTTGTCGATGCCGAACACGCCTTCGATCCCGTTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAGCTTTACCTGTCCCAGCCCGATACCGGCGAACAGGCTTTGGAAATCTGCGACACGCTCGTCC
GTTCGGGCGGCATAGATATGGTAGTCGTCGATTCCGTAGCCGCACTCGTCCCCAAAGCCGAAATCGAAGGCGATATGGGG
GACAGCCACGTCGGACTGCAGGCGCGCCTGATGAGTCAGGCTTTGCGCAAACTGACCGGACACATCAAAAAAACCAATAC
GCTGGTTGTGTTCATCAACCAAATCCGAATGAAGATCGGCGTAATGTTCGGCAGCCCCGAGACCACGACCGGCGGCAACG
CGCTGAAATTCTATTCTTCCGTCCGCCTCGACATCCGCCGCACCGGATCCATCAAAAAAGGCGAAGAAGTATTGGGCAAC
GAAACCCGCGTCAAAGTCATCAAAAACAAAGTCGCCCCCCCGTTCCGTCAGGCAGAGTTTGACATCCTCTACGGAGAAGG
CATCAGTTGGGAAGGCGAATTGATCGACATCGGCGTGAAAAACGACATCATCAACAAATCCGGCGCGTGGTACAGCTACA
ACGGCGCGAAAATCGGTCAGGGCAAAGACAACGTCCGCGTCTGGCTGAAAGAAAACCCCGAAATTTCCGACGAAATCGAC
GCAAAAATCCGCGCCCTCAACGGCGTAGAAATGCACATCACCGAAGGGACGCAGGACGAAACCGACGGCGAACGACCCGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

100

100

1
  recA Neisseria gonorrhoeae strain FA1090

100

100

1
  recA Neisseria gonorrhoeae MS11

100

100

1
  recA Ralstonia pseudosolanacearum GMI1000

74.468

94.54

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.949

100

0.681
  recA Vibrio cholerae strain A1552

66.949

100

0.681
  recA Glaesserella parasuis strain SC1401

67.521

100

0.681
  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67
  recA Acinetobacter baylyi ADP1

66.859

99.713

0.667
  recA Acinetobacter baumannii D1279779

65.517

100

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.103

97.989

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.073

94.253

0.632
  recA Helicobacter pylori 26695

67.077

93.391

0.626
  recA Helicobacter pylori strain NCTC11637

66.769

93.391

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

93.966

0.612
  recA Streptococcus mutans UA159

60.684

100

0.612
  recA Streptococcus pneumoniae TIGR4

59.544

100

0.601
  recA Streptococcus pneumoniae Rx1

59.544

100

0.601
  recA Streptococcus pneumoniae D39

59.544

100

0.601
  recA Streptococcus pneumoniae R6

59.544

100

0.601
  recA Streptococcus mitis NCTC 12261

59.884

98.851

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

62.691

93.966

0.589
  recA Streptococcus pyogenes NZ131

61.963

93.678

0.58
  recA Streptococcus mitis SK321

60.606

94.828

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.121

95.115

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.303

94.828

0.572