Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NCY29_RS04870 Genome accession   NZ_CP098411
Coordinates   1024160..1025221 (+) Length   353 a.a.
NCBI ID   WP_003574281.1    Uniprot ID   A0AAP5HN52
Organism   Lacticaseibacillus paracasei strain 401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1019160..1030221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY29_RS04850 (NCY29_04850) - 1020153..1020881 (+) 729 WP_003569514.1 SDR family oxidoreductase -
  NCY29_RS04855 (NCY29_04855) - 1020968..1021897 (+) 930 WP_003593861.1 helix-turn-helix domain-containing protein -
  NCY29_RS04860 (NCY29_04860) pgsA 1021894..1022487 (+) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NCY29_RS04865 (NCY29_04865) cinA 1022862..1024103 (+) 1242 WP_003601723.1 competence/damage-inducible protein A Machinery gene
  NCY29_RS04870 (NCY29_04870) recA 1024160..1025221 (+) 1062 WP_003574281.1 recombinase RecA Machinery gene
  NCY29_RS04875 (NCY29_04875) rny 1025516..1027087 (+) 1572 WP_003657913.1 ribonuclease Y -
  NCY29_RS04880 (NCY29_04880) - 1027181..1027831 (-) 651 WP_003574282.1 YigZ family protein -
  NCY29_RS04885 (NCY29_04885) - 1027859..1029121 (+) 1263 WP_003598114.1 helicase-related protein -
  NCY29_RS04890 (NCY29_04890) - 1029334..1029795 (+) 462 WP_003583965.1 ComF family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37765.97 Da        Isoelectric Point: 5.3230

>NTDB_id=695317 NCY29_RS04870 WP_003574281.1 1024160..1025221(+) (recA) [Lacticaseibacillus paracasei strain 401]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHTDLQQTIK
QQVRVAYGMAAAPGWETASVSEDQPEIPQQAEV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=695317 NCY29_RS04870 WP_003574281.1 1024160..1025221(+) (recA) [Lacticaseibacillus paracasei strain 401]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTCGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACACTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCGTATGGTATGGCAGCCGCACCTGGTTGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACCTCAACAGGCTGAAGTATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.963

98.3

0.776
  recA Bacillus subtilis subsp. subtilis str. 168

74.154

92.068

0.683
  recA Streptococcus mutans UA159

67.919

98.017

0.666
  recA Streptococcus mitis SK321

67.919

98.017

0.666
  recA Streptococcus mitis NCTC 12261

67.919

98.017

0.666
  recA Streptococcus pyogenes NZ131

70.606

93.484

0.66
  recA Streptococcus pneumoniae D39

69.486

93.768

0.652
  recA Streptococcus pneumoniae Rx1

69.486

93.768

0.652
  recA Streptococcus pneumoniae R6

69.486

93.768

0.652
  recA Streptococcus pneumoniae TIGR4

69.486

93.768

0.652
  recA Lactococcus lactis subsp. cremoris KW2

68.882

93.768

0.646
  recA Ralstonia pseudosolanacearum GMI1000

65.176

88.669

0.578
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae strain FA1090

62.385

92.635

0.578
  recA Acinetobacter baylyi ADP1

58.43

97.45

0.569
  recA Pseudomonas stutzeri DSM 10701

58.235

96.317

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

91.501

0.561
  recA Acinetobacter baumannii D1279779

61.059

90.935

0.555
  recA Glaesserella parasuis strain SC1401

54.83

99.717

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.021

92.635

0.547
  recA Helicobacter pylori 26695

58.182

93.484

0.544
  recA Helicobacter pylori strain NCTC11637

58.182

93.484

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.19

90.935

0.538
  recA Vibrio cholerae strain A1552

59.19

90.935

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.269

92.635

0.521