Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NB645_RS09550 Genome accession   NZ_CP098248
Coordinates   2084477..2085541 (-) Length   354 a.a.
NCBI ID   WP_269264495.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain HOxNP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2079477..2090541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB645_RS09530 (NB645_09505) argH 2079571..2080965 (-) 1395 WP_269264491.1 argininosuccinate lyase -
  NB645_RS09535 (NB645_09510) ilvD 2081103..2082953 (-) 1851 WP_269264492.1 dihydroxy-acid dehydratase -
  NB645_RS09540 (NB645_09515) lgt 2083153..2083962 (+) 810 WP_269264493.1 prolipoprotein diacylglyceryl transferase -
  NB645_RS09545 (NB645_09520) recX 2083980..2084429 (-) 450 WP_269264494.1 recombination regulator RecX -
  NB645_RS09550 (NB645_09525) recA 2084477..2085541 (-) 1065 WP_269264495.1 recombinase RecA Machinery gene
  NB645_RS09555 (NB645_09530) - 2085791..2086363 (+) 573 WP_269264496.1 DUF2889 domain-containing protein -
  NB645_RS09560 (NB645_09535) xseA 2086543..2087922 (+) 1380 WP_332880114.1 exodeoxyribonuclease VII large subunit -
  NB645_RS09565 (NB645_09540) - 2087927..2089060 (-) 1134 WP_269264497.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37976.14 Da        Isoelectric Point: 5.0621

>NTDB_id=694691 NB645_RS09550 WP_269264495.1 2084477..2085541(-) (recA) [Oxalobacter aliiformigenes strain HOxNP-1]
MDDNKTASNQEKNKALAIALAQIEKQFGKGSIMRMAPGVVVEEIPAVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLPDLLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPKA
EIEGDMGDSLPGLQARLMSQALRKLTGSINKNNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIKS
GDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGAEAKIVEKAGSWYSYNGERIGQGKDNARNYLRAHP
KLAREIENKVRTSYGVRELPPVEDDAAETENSGE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=694691 NB645_RS09550 WP_269264495.1 2084477..2085541(-) (recA) [Oxalobacter aliiformigenes strain HOxNP-1]
ATGGACGATAATAAAACTGCATCCAATCAGGAAAAAAACAAGGCATTGGCCATTGCTCTTGCGCAGATTGAAAAGCAATT
CGGAAAAGGATCCATCATGCGGATGGCGCCCGGAGTTGTCGTTGAGGAAATTCCTGCTGTATCGACAGGTTCCTTGGGGT
TGGATATCGCACTGGGTGTCGGTGGTTTGCCCAGGGGACGGGTTATCGAGATTTACGGCCCGGAATCTTCAGGTAAAACG
ACGCTGACGTTGCAGGTCATTGCGGAGATGCAAAAACTGGGAGGGACGTGTGCGTTTATCGATGCCGAACATGCACTGGA
TGTCGGTTATGCGCAGAAACTGGGGGTTCATCTGCCCGATCTGCTGATTTCGCAGCCGGATACCGGAGAACAGGCGCTTG
AGATTACGGATGCACTGGTCCGTTCCGGTGGCGTTGACCTGATCGTGATCGATTCGGTTGCGGCATTGACACCCAAGGCT
GAAATTGAAGGTGATATGGGTGATTCCCTGCCGGGATTGCAGGCAAGATTGATGTCACAGGCGTTGCGAAAGCTCACAGG
CAGCATTAATAAAAACAATACAACCGTCATATTCATCAATCAGATCCGTATGAAGATCGGTGTCATGTTCGGTAATCCTG
AAACGACGACGGGGGGGAATGCACTGAAATTCTATTCTTCTGTCCGCCTGGATATCCGCCGGACAGGATCGATCAAATCC
GGCGATGAGGTAATCGGCAGCGAAACACGTGTCAAGGTCGTCAAGAACAAAACAGCTCCTCCGTTCAAGGAAGCCTATTT
TGATATTCTTTATGGAGAGGGGACTTCCCGTGAAGGTGAGATCCTCGATCTGGGAGCGGAAGCCAAAATCGTTGAGAAGG
CCGGTTCGTGGTATAGCTATAATGGGGAACGGATCGGGCAGGGAAAAGACAATGCACGTAACTATTTGCGTGCACATCCC
AAACTGGCTCGCGAAATTGAAAACAAGGTCAGGACATCTTATGGTGTCAGGGAATTGCCTCCCGTAGAAGATGATGCAGC
GGAAACGGAAAATTCCGGAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.473

95.48

0.768
  recA Neisseria gonorrhoeae MS11

68.713

96.61

0.664
  recA Neisseria gonorrhoeae strain FA1090

68.713

96.61

0.664
  recA Neisseria gonorrhoeae MS11

68.713

96.61

0.664
  recA Pseudomonas stutzeri DSM 10701

68.222

96.893

0.661
  recA Acinetobacter baylyi ADP1

69.184

93.503

0.647
  recA Acinetobacter baumannii D1279779

69.184

93.503

0.647
  recA Vibrio cholerae strain A1552

69.35

91.243

0.633
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.35

91.243

0.633
  recA Glaesserella parasuis strain SC1401

67.781

92.938

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.429

98.87

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

61.919

97.175

0.602
  recA Helicobacter pylori 26695

61.919

97.175

0.602
  recA Helicobacter pylori strain NCTC11637

61.919

97.175

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

93.503

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

65.031

92.09

0.599
  recA Streptococcus mutans UA159

58.621

98.305

0.576
  recA Streptococcus mitis NCTC 12261

57.67

99.435

0.573
  recA Streptococcus pyogenes NZ131

61.094

92.938

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.824

96.045

0.565
  recA Streptococcus pneumoniae R6

60.606

93.22

0.565
  recA Streptococcus pneumoniae Rx1

60.606

93.22

0.565
  recA Streptococcus pneumoniae D39

60.606

93.22

0.565
  recA Streptococcus pneumoniae TIGR4

60.606

93.22

0.565
  recA Streptococcus mitis SK321

60.303

93.22

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.248

90.96

0.548