Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NB636_RS11080 Genome accession   NZ_CP098247
Coordinates   2275587..2276651 (+) Length   354 a.a.
NCBI ID   WP_269278803.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain BA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2270587..2281651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB636_RS11065 (NB636_11030) - 2272067..2273200 (+) 1134 WP_269278807.1 deoxyguanosinetriphosphate triphosphohydrolase -
  NB636_RS11070 (NB636_11035) xseA 2273205..2274578 (-) 1374 WP_269278973.1 exodeoxyribonuclease VII large subunit -
  NB636_RS11075 (NB636_11040) - 2274764..2275336 (-) 573 WP_269278805.1 DUF2889 domain-containing protein -
  NB636_RS11080 (NB636_11045) recA 2275587..2276651 (+) 1065 WP_269278803.1 recombinase RecA Machinery gene
  NB636_RS11085 (NB636_11050) recX 2276699..2277148 (+) 450 WP_269278801.1 recombination regulator RecX -
  NB636_RS11090 (NB636_11055) lgt 2277167..2277976 (-) 810 WP_269278798.1 prolipoprotein diacylglyceryl transferase -
  NB636_RS11095 (NB636_11060) ilvD 2278176..2280026 (+) 1851 WP_269278796.1 dihydroxy-acid dehydratase -
  NB636_RS11100 (NB636_11065) argH 2280165..2281559 (+) 1395 WP_269278793.1 argininosuccinate lyase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37946.12 Da        Isoelectric Point: 5.0621

>NTDB_id=694676 NB636_RS11080 WP_269278803.1 2275587..2276651(+) (recA) [Oxalobacter aliiformigenes strain BA2]
MDDNKTASNQEKNKALAIALAQIEKQFGKGSIMRMAPGVVVEEIPAVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLPDLLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPKA
EIEGDMGDSLPGLQARLMSQALRKLTGSINKNNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIKS
GDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGAEAKIVEKAGSWYSYNGERIGQGKDNARNYLRAHP
KLAREIENKVRASYGVRELPPVEDDAAETENSGE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=694676 NB636_RS11080 WP_269278803.1 2275587..2276651(+) (recA) [Oxalobacter aliiformigenes strain BA2]
ATGGACGATAATAAAACTGCATCCAATCAGGAAAAAAACAAGGCATTGGCCATTGCTCTTGCGCAGATTGAAAAGCAATT
CGGAAAAGGATCCATCATGCGGATGGCGCCCGGAGTTGTCGTTGAGGAAATTCCTGCTGTATCGACAGGTTCCCTGGGGC
TGGATATCGCACTGGGTGTCGGTGGCTTGCCCAGGGGACGGGTTATCGAGATTTACGGCCCGGAATCTTCAGGTAAAACG
ACGCTGACGTTGCAGGTCATCGCGGAGATGCAAAAACTGGGAGGGACGTGTGCGTTTATCGATGCCGAACATGCACTGGA
TGTCGGTTATGCGCAGAAACTGGGGGTTCATCTGCCCGATCTGCTGATTTCGCAGCCGGATACCGGAGAACAGGCGCTTG
AGATTACGGATGCACTGGTCCGTTCCGGTGGCGTTGACCTGATCGTGATCGATTCGGTTGCGGCATTGACGCCCAAGGCT
GAGATTGAAGGTGATATGGGGGATTCCCTGCCGGGATTGCAGGCAAGATTGATGTCACAGGCGTTGCGAAAGCTCACAGG
CAGCATTAATAAAAACAATACAACCGTCATATTCATCAATCAGATCCGTATGAAGATCGGTGTCATGTTCGGTAATCCTG
AAACGACGACGGGGGGAAATGCACTGAAATTCTACTCTTCTGTCCGCCTGGATATCCGCCGGACAGGATCGATCAAATCC
GGCGATGAAGTAATCGGCAGCGAAACACGTGTCAAGGTCGTCAAGAACAAAACAGCTCCTCCGTTCAAGGAAGCCTATTT
TGATATTCTTTATGGAGAAGGGACATCCCGTGAAGGTGAGATCCTCGATCTGGGAGCGGAAGCCAAAATCGTTGAGAAGG
CCGGTTCGTGGTATAGCTATAATGGAGAACGGATCGGTCAGGGAAAAGACAATGCACGTAACTATTTGCGTGCACATCCC
AAACTGGCTCGCGAAATTGAAAACAAGGTCAGGGCATCTTATGGTGTCAGGGAATTGCCTCCCGTAGAAGATGATGCTGC
GGAAACGGAAAATTCCGGAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.473

95.48

0.768
  recA Neisseria gonorrhoeae MS11

69.006

96.61

0.667
  recA Neisseria gonorrhoeae MS11

69.006

96.61

0.667
  recA Neisseria gonorrhoeae strain FA1090

69.006

96.61

0.667
  recA Pseudomonas stutzeri DSM 10701

67.63

97.74

0.661
  recA Acinetobacter baylyi ADP1

69.184

93.503

0.647
  recA Acinetobacter baumannii D1279779

69.184

93.503

0.647
  recA Vibrio cholerae strain A1552

69.35

91.243

0.633
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.35

91.243

0.633
  recA Glaesserella parasuis strain SC1401

68.196

92.373

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.429

98.87

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

62.209

97.175

0.605
  recA Helicobacter pylori 26695

61.919

97.175

0.602
  recA Helicobacter pylori strain NCTC11637

61.919

97.175

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

93.503

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

65.031

92.09

0.599
  recA Streptococcus mutans UA159

58.621

98.305

0.576
  recA Streptococcus mitis NCTC 12261

57.67

99.435

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.118

96.045

0.568
  recA Streptococcus pyogenes NZ131

61.094

92.938

0.568
  recA Streptococcus pneumoniae D39

60.606

93.22

0.565
  recA Streptococcus pneumoniae Rx1

60.606

93.22

0.565
  recA Streptococcus pneumoniae R6

60.606

93.22

0.565
  recA Streptococcus pneumoniae TIGR4

60.606

93.22

0.565
  recA Streptococcus mitis SK321

60.303

93.22

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

91.808

0.551