Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NB644_RS00205 Genome accession   NZ_CP098246
Coordinates   41788..42849 (-) Length   353 a.a.
NCBI ID   WP_005882659.1    Uniprot ID   C3XCS9
Organism   Oxalobacter formigenes strain HOxSLD-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36788..47849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB644_RS00185 (NB644_00185) argH 36862..38259 (-) 1398 WP_005882668.1 argininosuccinate lyase -
  NB644_RS00190 (NB644_00190) ilvD 38386..40242 (-) 1857 WP_005882665.1 dihydroxy-acid dehydratase -
  NB644_RS00195 (NB644_00195) lgt 40451..41263 (+) 813 WP_005882663.1 prolipoprotein diacylglyceryl transferase -
  NB644_RS00200 (NB644_00200) recX 41288..41734 (-) 447 WP_005882661.1 recombination regulator RecX -
  NB644_RS00205 (NB644_00205) recA 41788..42849 (-) 1062 WP_005882659.1 recombinase RecA Machinery gene
  NB644_RS00210 (NB644_00210) - 43102..43674 (+) 573 WP_005882657.1 DUF2889 domain-containing protein -
  NB644_RS00215 (NB644_00215) xseA 43868..45202 (+) 1335 WP_005882655.1 exodeoxyribonuclease VII large subunit -
  NB644_RS00220 (NB644_00220) - 45205..46338 (-) 1134 WP_005882653.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37885.12 Da        Isoelectric Point: 5.6006

>NTDB_id=694651 NB644_RS00205 WP_005882659.1 41788..42849(-) (recA) [Oxalobacter formigenes strain HOxSLD-2]
MDDNKNASNQEKNKALSAALAQIEKQFGKGSVMRMAPGVVVEEIPSVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQDLLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPKA
EIEGDMGDSLPGLQARLMSQALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIKS
GDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGSEAKIVDKAGAWYSYNGEKIGQGKDNARNYLRANP
KLAREIENKVRASYGVRELPPIKDKEESAEEAK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=694651 NB644_RS00205 WP_005882659.1 41788..42849(-) (recA) [Oxalobacter formigenes strain HOxSLD-2]
ATGGACGATAATAAAAACGCATCCAATCAGGAGAAAAACAAGGCACTCTCAGCTGCGTTGGCTCAAATTGAAAAGCAATT
CGGCAAAGGTTCCGTTATGCGGATGGCGCCCGGTGTTGTTGTGGAAGAAATTCCTTCCGTTTCAACAGGGTCTCTGGGAC
TGGATATCGCTTTGGGCGTTGGCGGTTTGCCAAGAGGCCGGGTTATCGAAATTTACGGTCCTGAATCGTCCGGTAAAACA
ACCCTGACCTTGCAGGTCATCGCAGAAATGCAGAAACTGGGCGGAACCTGCGCCTTCATCGACGCCGAACACGCTCTTGA
TGTAGGCTATGCACAGAAACTGGGTGTTCATTTGCAGGATTTGCTGATTTCCCAGCCGGATACAGGCGAACAGGCCCTTG
AAATTACGGATGCACTGGTTCGTTCCGGTGGCGTCGATCTGATCGTCATCGACTCGGTTGCCGCATTGACGCCAAAAGCC
GAAATCGAAGGCGATATGGGCGATTCACTTCCCGGTCTTCAGGCGCGCCTGATGTCGCAGGCCTTGCGCAAATTGACCGG
CAGTATCAACAAGACCAATACATCCGTTATTTTCATTAACCAGATCCGTATGAAAATCGGCGTCATGTTCGGCAATCCCG
AAACGACGACGGGTGGTAATGCACTGAAATTCTATTCATCGGTCCGTCTGGATATTCGCCGTACCGGTTCCATCAAGTCC
GGAGATGAAGTCATCGGCAGTGAAACCCGTGTCAAGGTTGTCAAGAACAAGACGGCGCCTCCATTCAAGGAAGCGTATTT
CGACATCCTGTATGGTGAAGGCACTTCCCGCGAAGGGGAAATTCTGGATCTGGGCTCCGAAGCCAAGATTGTCGACAAGG
CAGGGGCATGGTACAGCTACAATGGTGAGAAGATCGGGCAGGGCAAGGACAATGCCCGCAACTATCTACGTGCCAATCCG
AAACTGGCCCGTGAAATCGAAAACAAGGTCCGTGCTTCGTATGGTGTCCGGGAATTGCCTCCGATAAAAGATAAGGAAGA
AAGTGCCGAAGAGGCAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3XCS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

77.62

100

0.776
  recA Acinetobacter baylyi ADP1

67.236

99.433

0.669
  recA Neisseria gonorrhoeae MS11

71.646

92.918

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.646

92.918

0.666
  recA Neisseria gonorrhoeae MS11

71.646

92.918

0.666
  recA Acinetobacter baumannii D1279779

68.713

96.884

0.666
  recA Pseudomonas stutzeri DSM 10701

71.914

91.785

0.66
  recA Glaesserella parasuis strain SC1401

69.725

92.635

0.646
  recA Vibrio cholerae strain A1552

69.659

91.501

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.659

91.501

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.823

99.433

0.615
  recA Helicobacter pylori 26695

63.343

96.601

0.612
  recA Helicobacter pylori strain NCTC11637

62.757

96.601

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.244

92.918

0.606
  recA Streptococcus mitis SK321

58.824

100

0.595
  recA Streptococcus mitis NCTC 12261

58.824

100

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

92.351

0.595
  recA Streptococcus mutans UA159

60.29

97.734

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

94.334

0.589
  recA Streptococcus pyogenes NZ131

62.31

93.201

0.581
  recA Streptococcus pneumoniae Rx1

61.212

93.484

0.572
  recA Streptococcus pneumoniae D39

61.212

93.484

0.572
  recA Streptococcus pneumoniae R6

61.212

93.484

0.572
  recA Streptococcus pneumoniae TIGR4

61.212

93.484

0.572
  recA Lactococcus lactis subsp. cremoris KW2

59.118

96.317

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

92.068

0.544