Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NBE99_RS06815 Genome accession   NZ_CP098039
Coordinates   1411767..1412825 (-) Length   352 a.a.
NCBI ID   WP_250681360.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HN-54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1406767..1417825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBE99_RS06785 (NBE99_06780) - 1406852..1408483 (+) 1632 WP_250681355.1 helicase HerA domain-containing protein -
  NBE99_RS06790 (NBE99_06785) - 1408550..1408777 (+) 228 WP_250681356.1 ferredoxin family protein -
  NBE99_RS06795 (NBE99_06790) nagA 1408774..1409895 (+) 1122 WP_250681357.1 N-acetylglucosamine-6-phosphate deacetylase -
  NBE99_RS06800 (NBE99_06795) - 1409897..1410166 (-) 270 WP_250681358.1 CD225/dispanin family protein -
  NBE99_RS06805 (NBE99_06800) - 1410393..1411259 (+) 867 WP_250683701.1 tetratricopeptide repeat protein -
  NBE99_RS06810 (NBE99_06805) - 1411261..1411800 (+) 540 WP_250681359.1 N-acetyltransferase -
  NBE99_RS06815 (NBE99_06810) recA 1411767..1412825 (-) 1059 WP_250681360.1 recombinase RecA Machinery gene
  NBE99_RS06820 (NBE99_06815) - 1412887..1413702 (-) 816 WP_250681361.1 hypothetical protein -
  NBE99_RS06825 (NBE99_06820) - 1413735..1414193 (+) 459 WP_250681362.1 co-chaperone YbbN -
  NBE99_RS06830 (NBE99_06825) - 1414208..1415365 (+) 1158 WP_250681363.1 DUF58 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.86 Da        Isoelectric Point: 5.7649

>NTDB_id=693799 NBE99_RS06815 WP_250681360.1 1411767..1412825(-) (recA) [Thermosynechococcus sp. HN-54]
MSDATLSPEKRKALDLAVAQIERNFGKGSIMRLGDATRMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLAL
HAVAEVQKAGGVAAFVDAEHALDPTYAAALGVDIENLLVAQPDTGEVGLEIVDQLVRSTAVDIVVVDSVAALVPRAEIEG
DMGDSHVGLQARLMSQALRKITGNIGKTGCTVIFLNQLRQKIGVTYGNPETTTGGTALKFYASVRLDIRRVQTLKRGTEE
FGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISNLGCILDMAEETGVISRKGAWYSYNGENLAQGRDNTIKYMEENPAFAQ
AVEQQVRQKLDQGAAVSANTVTHTHEEMGEGE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=693799 NBE99_RS06815 WP_250681360.1 1411767..1412825(-) (recA) [Thermosynechococcus sp. HN-54]
ATGAGTGACGCCACCCTCTCCCCCGAAAAGCGCAAAGCCCTCGATCTAGCCGTTGCCCAAATCGAACGTAATTTTGGTAA
AGGCAGCATCATGCGCCTTGGGGATGCCACCCGGATGAAGGTGGAGACCATTTCCAGTGGCGCACTCACCCTTGACCTTG
CCTTGGGCGGTGGACTGCCGAAGGGGCGGATCATTGAAATTTATGGCCCTGAAAGTTCGGGGAAAACCACCCTAGCGCTC
CATGCCGTGGCTGAAGTTCAGAAAGCGGGTGGGGTGGCTGCCTTTGTGGATGCGGAACATGCTCTTGATCCCACCTATGC
GGCTGCCCTCGGCGTGGACATTGAAAACCTACTGGTTGCCCAGCCAGACACTGGGGAAGTGGGCTTAGAAATTGTTGATC
AACTGGTGCGCTCCACAGCCGTAGATATTGTGGTGGTGGACTCCGTTGCAGCATTGGTACCCCGCGCCGAAATTGAGGGG
GATATGGGGGATAGCCATGTGGGACTGCAAGCCCGCCTGATGAGCCAAGCGCTGCGCAAAATTACCGGCAATATCGGTAA
AACGGGTTGCACCGTGATTTTCCTGAACCAATTGCGGCAAAAAATTGGCGTCACCTACGGTAACCCTGAAACGACCACCG
GCGGAACAGCCCTCAAGTTTTATGCCTCCGTGCGGTTGGATATTCGCCGTGTTCAAACTCTGAAAAGGGGGACGGAGGAA
TTTGGGATTCGTGCCAAGGTCAAGGTAGCTAAAAACAAGGTGGCTCCTCCCTTTCGCATTGCTGAATTTGACATCATTTT
TGGTAAGGGCATTTCCAATCTCGGCTGTATTCTCGATATGGCCGAGGAAACGGGTGTGATTAGCCGCAAAGGGGCTTGGT
ATTCCTATAACGGCGAAAATCTTGCCCAAGGCCGCGACAACACCATCAAGTACATGGAGGAAAACCCCGCCTTTGCCCAA
GCAGTGGAACAGCAGGTACGCCAAAAACTAGACCAAGGGGCAGCCGTCTCCGCCAATACCGTGACTCATACCCACGAGGA
AATGGGCGAAGGGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

60.745

99.148

0.602
  recA Acinetobacter baylyi ADP1

60.983

98.295

0.599
  recA Ralstonia pseudosolanacearum GMI1000

63.415

93.182

0.591
  recA Acinetobacter baumannii D1279779

62.883

92.614

0.582
  recA Streptococcus pneumoniae TIGR4

58.96

98.295

0.58
  recA Streptococcus pneumoniae Rx1

58.96

98.295

0.58
  recA Streptococcus pneumoniae D39

58.96

98.295

0.58
  recA Streptococcus pneumoniae R6

58.96

98.295

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.515

93.75

0.577
  recA Neisseria gonorrhoeae strain FA1090

62.654

92.045

0.577
  recA Neisseria gonorrhoeae MS11

62.654

92.045

0.577
  recA Neisseria gonorrhoeae MS11

62.654

92.045

0.577
  recA Glaesserella parasuis strain SC1401

61.774

92.898

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.193

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.701

95.17

0.568
  recA Streptococcus mitis SK321

61.111

92.045

0.562
  recA Streptococcus mitis NCTC 12261

61.111

92.045

0.562
  recA Helicobacter pylori 26695

60.55

92.898

0.562
  recA Streptococcus pyogenes NZ131

60.55

92.898

0.562
  recA Helicobacter pylori strain NCTC11637

60.55

92.898

0.562
  recA Streptococcus mutans UA159

60.494

92.045

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.633

92.898

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.896

92.614

0.545
  recA Vibrio cholerae strain A1552

58.896

92.614

0.545
  recA Lactococcus lactis subsp. cremoris KW2

59.259

92.045

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

93.182

0.54