Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M8T91_RS12330 Genome accession   NZ_CP098023
Coordinates   2939548..2940582 (-) Length   344 a.a.
NCBI ID   WP_301414456.1    Uniprot ID   -
Organism   Microbulbifer sp. MI-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2934548..2945582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8T91_RS12315 (M8T91_12290) - 2936975..2937961 (-) 987 WP_301414453.1 FecR family protein -
  M8T91_RS12320 (M8T91_12295) - 2938017..2938532 (-) 516 WP_301414454.1 sigma-70 family RNA polymerase sigma factor -
  M8T91_RS12325 (M8T91_12300) - 2939065..2939547 (-) 483 WP_301414455.1 regulatory protein RecX -
  M8T91_RS12330 (M8T91_12305) recA 2939548..2940582 (-) 1035 WP_301414456.1 recombinase RecA Machinery gene
  M8T91_RS12335 (M8T91_12310) - 2940743..2941270 (-) 528 WP_301414457.1 CinA family protein -
  M8T91_RS12340 (M8T91_12315) - 2941560..2942300 (-) 741 WP_301414458.1 SDR family NAD(P)-dependent oxidoreductase -
  M8T91_RS12345 (M8T91_12320) - 2942332..2944395 (-) 2064 WP_301414459.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  M8T91_RS12350 (M8T91_12325) - 2944629..2945033 (-) 405 WP_301414460.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37066.35 Da        Isoelectric Point: 5.0622

>NTDB_id=693590 M8T91_RS12330 WP_301414456.1 2939548..2940582(-) (recA) [Microbulbifer sp. MI-G]
MDSNKDKALKAALSQIERQFGKGTVMRMGDKERERIPAVSTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRGGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
AHVGLQARLMSQALRKLTANIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVAPPFKQTEFQILYGEGINLIGEIVDYGVKLGLVDKAGAWYSYKGDKIGQGKANASRFLRENPDIRREIEE
QLRAQLLGDLVPAGAEETAELPQE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=693590 M8T91_RS12330 WP_301414456.1 2939548..2940582(-) (recA) [Microbulbifer sp. MI-G]
ATGGATTCCAACAAAGACAAGGCTCTGAAGGCGGCGCTGTCGCAGATCGAACGCCAGTTTGGCAAGGGCACAGTGATGCG
CATGGGGGACAAGGAGCGGGAACGCATTCCGGCGGTCTCCACCGGCTCCCTCGGCCTGGACGTAGCCCTGGGCATTGGCG
GCCTGCCGCGCGGTCGTATTGTGGAAATCTATGGCCCGGAGTCCTCCGGTAAAACCACCCTGACGCTACAGGTGATTGCT
GAAGCCCAGCGCGGTGGGGGCACCTGTGCGTTTGTGGATGCGGAACACGCCCTTGATCCCATCTATGCTGAGAAACTCGG
CGTCAATGTCGATGAGTTGATTGTGTCCCAGCCGGATACCGGTGAACAGGCTCTGGAAGTGGCGGATATGCTCGTGCGCT
CCGGTGCTGTGGATGTATTGGTGGTGGACTCTGTGGCGGCCCTGACGCCACGCGCCGAGATCGAAGGCGAAATGGGGGAT
GCACACGTTGGCCTGCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGCTCACCGCCAATATCAAGAACACCAACACCCT
GTGTGTTTTTATTAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTTCCCCGGAAACCACCACCGGGGGCAACGCGC
TCAAGTTCTACTCCTCTGTGCGGCTGGATATCCGCCGCATCGGCTCTGTAAAAGACGGCGATGAAGTGGTGGGTAACGAA
ACCCGTGTGAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCAAGCAGACCGAGTTTCAGATTCTGTACGGCGAAGGCAT
TAACCTGATTGGCGAGATAGTCGATTACGGCGTTAAGCTGGGCCTGGTGGACAAGGCAGGTGCCTGGTACAGCTATAAGG
GCGACAAAATTGGCCAGGGCAAGGCCAATGCCTCCCGATTCCTGCGCGAGAATCCGGATATCCGCCGTGAGATCGAAGAG
CAGTTGCGCGCACAACTGCTGGGCGATCTGGTCCCGGCCGGCGCTGAAGAGACTGCGGAACTTCCGCAGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.122

95.058

0.762
  recA Acinetobacter baylyi ADP1

72.093

100

0.721
  recA Acinetobacter baumannii D1279779

74.006

95.058

0.703
  recA Ralstonia pseudosolanacearum GMI1000

72.036

95.64

0.689
  recA Vibrio cholerae strain A1552

71.865

95.058

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.865

95.058

0.683
  recA Neisseria gonorrhoeae MS11

72

94.477

0.68
  recA Neisseria gonorrhoeae MS11

72

94.477

0.68
  recA Neisseria gonorrhoeae strain FA1090

72

94.477

0.68
  recA Glaesserella parasuis strain SC1401

71.739

93.605

0.672
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

98.256

0.625
  recA Helicobacter pylori strain NCTC11637

60.58

100

0.608
  recA Helicobacter pylori 26695

60.58

100

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

65.109

93.314

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

96.221

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

63.091

92.151

0.581
  recA Streptococcus mutans UA159

60.923

94.477

0.576
  recA Streptococcus pneumoniae TIGR4

59.756

95.349

0.57
  recA Streptococcus pneumoniae D39

59.756

95.349

0.57
  recA Streptococcus mitis NCTC 12261

59.756

95.349

0.57
  recA Streptococcus pneumoniae Rx1

59.756

95.349

0.57
  recA Streptococcus pneumoniae R6

59.756

95.349

0.57
  recA Streptococcus mitis SK321

59.451

95.349

0.567
  recA Streptococcus pyogenes NZ131

59.568

94.186

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

93.895

0.558
  recA Lactococcus lactis subsp. cremoris KW2

57.012

95.349

0.544