Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NAA64_RS07870 Genome accession   NZ_CP097887
Coordinates   1624829..1625881 (-) Length   350 a.a.
NCBI ID   WP_107376835.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain SA283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1619829..1630881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAA64_RS07855 (NAA64_07855) - 1621625..1622416 (-) 792 WP_167867912.1 TIGR00282 family metallophosphoesterase -
  NAA64_RS07860 (NAA64_07860) - 1622578..1622793 (+) 216 WP_107380317.1 hypothetical protein -
  NAA64_RS07865 (NAA64_07865) rny 1622871..1624430 (-) 1560 WP_002511012.1 ribonuclease Y -
  NAA64_RS07870 (NAA64_07870) recA 1624829..1625881 (-) 1053 WP_107376835.1 recombinase RecA Machinery gene
  NAA64_RS07875 (NAA64_07875) - 1626035..1627183 (-) 1149 WP_167867913.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  NAA64_RS07880 (NAA64_07880) pgsA 1627323..1627901 (-) 579 WP_002511009.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NAA64_RS07885 (NAA64_07885) - 1627946..1628338 (-) 393 WP_002511008.1 helix-turn-helix domain-containing protein -
  NAA64_RS07890 (NAA64_07890) - 1628372..1629202 (-) 831 WP_002511007.1 DUF3388 domain-containing protein -
  NAA64_RS07895 (NAA64_07895) ymfI 1629340..1630044 (-) 705 WP_002511006.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38088.99 Da        Isoelectric Point: 4.8715

>NTDB_id=693357 NAA64_RS07870 WP_107376835.1 1624829..1625881(-) (recA) [Staphylococcus arlettae strain SA283]
MDNERQKALDTVIKNMEKSFGKGSVMKLGDNKARRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQRNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPEIKKDIDQ
KLREKLGIFDGDIEETEESEESTPNLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=693357 NAA64_RS07870 WP_107376835.1 1624829..1625881(-) (recA) [Staphylococcus arlettae strain SA283]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCATTTGGTAAAGGTTCAGTAATGAA
ATTAGGCGACAATAAAGCTCGCAGAGTATCAAGTGTTTCAAGTGGTTCTGTAACATTGGATAATGCCTTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATCTATGGACCAGAAAGTTCAGGTAAAACGACTGTTGCATTACATGCTATAGCT
GAAGTACAAAGAAATGGTGGAATTGCAGCATTTATCGATGCCGAACACGCACTTGACCCTGTTTATGCTGAAGCTTTAGG
TGTCGATATTGATAATTTATATTTATCACAACCTGACCACGGGGAACAAGGTCTTGAAATCGCAGAGGCTTTTGTTAGAA
GTGGTGCGGTAGATATCGTAGTAGTAGACTCAGTTGCAGCATTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTAGGCTTACAAGCAAGATTAATGTCTCAAGCATTACGTAAACTATCAGGGGCAATTTCTAAATCTAACACTAC
TGCAGTATTTATTAACCAAATCCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAACAACACCTGGTGGACGTGCAT
TGAAATTCTACAGTTCAGTGCGTTTAGAAGTACGTCGTGCAGAGCAATTAAAACAAGGTCAAGACATTGTAGGTAATAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTGGCACCTCCTTTCAGAGTAGCAGAAGTTGATATTATGTACGGTAAAGGTAT
TTCTAAAGAAGGTGAACTTATCGATTTAGGTGTTGAAAATGATATCGTCGATAAGTCAGGCGCATGGTATTCATATAATG
GAGAGCGTATGGGTCAAGGTAAGGAAAATGTAAAAACTTATCTAAAAGAAAACCCTGAAATTAAAAAGGATATTGATCAA
AAATTACGTGAAAAATTAGGTATTTTTGATGGTGATATCGAAGAAACCGAAGAATCCGAAGAATCAACACCGAATTTATT
CGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.607

93.143

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

68.391

99.429

0.68
  recA Streptococcus pneumoniae Rx1

66

100

0.66
  recA Streptococcus pneumoniae D39

66

100

0.66
  recA Streptococcus pneumoniae R6

66

100

0.66
  recA Streptococcus pneumoniae TIGR4

66

100

0.66
  recA Streptococcus mutans UA159

65.057

100

0.654
  recA Streptococcus mitis NCTC 12261

64.773

100

0.651
  recA Streptococcus mitis SK321

66.082

97.714

0.646
  recA Streptococcus pyogenes NZ131

67.781

94

0.637
  recA Lactococcus lactis subsp. cremoris KW2

66.163

94.571

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.93

97.429

0.623
  recA Acinetobacter baylyi ADP1

62.644

99.429

0.623
  recA Acinetobacter baumannii D1279779

62.464

99.714

0.623
  recA Neisseria gonorrhoeae MS11

65.35

94

0.614
  recA Neisseria gonorrhoeae MS11

65.35

94

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.35

94

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

93.143

0.614
  recA Vibrio cholerae strain A1552

65.951

93.143

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.22

93.429

0.6
  recA Helicobacter pylori 26695

63.72

93.714

0.597
  recA Helicobacter pylori strain NCTC11637

63.415

93.714

0.594
  recA Pseudomonas stutzeri DSM 10701

60.411

97.429

0.589
  recA Glaesserella parasuis strain SC1401

62.037

92.571

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.571

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

91.429

0.563