Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M8789_RS06080 Genome accession   NZ_CP097571
Coordinates   1263394..1264437 (+) Length   347 a.a.
NCBI ID   WP_000368170.1    Uniprot ID   A0AA40JL38
Organism   Staphylococcus aureus strain V40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1258394..1269437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8789_RS06055 (M8789_06055) ymfI 1259193..1259897 (+) 705 WP_000646221.1 elongation factor P 5-aminopentanone reductase -
  M8789_RS06060 (M8789_06060) - 1260002..1260829 (+) 828 WP_000214890.1 YmfK family protein -
  M8789_RS06065 (M8789_06065) - 1260848..1261240 (+) 393 WP_187395649.1 helix-turn-helix domain-containing protein -
  M8789_RS06070 (M8789_06070) pgsA 1261274..1261852 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M8789_RS06075 (M8789_06075) - 1262078..1263229 (+) 1152 WP_000020352.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  M8789_RS06080 (M8789_06080) recA 1263394..1264437 (+) 1044 WP_000368170.1 recombinase RecA Machinery gene
  M8789_RS06085 (M8789_06085) rny 1264792..1266351 (+) 1560 WP_001050913.1 ribonuclease Y -
  M8789_RS06090 (M8789_06090) - 1266648..1266863 (-) 216 WP_000026308.1 hypothetical protein -
  M8789_RS06095 (M8789_06095) - 1267037..1267834 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37671.54 Da        Isoelectric Point: 4.9182

>NTDB_id=690184 M8789_RS06080 WP_000368170.1 1263394..1264437(+) (recA) [Staphylococcus aureus strain V40]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEETEDSPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=690184 M8789_RS06080 WP_000368170.1 1263394..1264437(+) (recA) [Staphylococcus aureus strain V40]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GATATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCAATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCATGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTAAAAATGTACTTGAAAGAAAATCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATTCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.435

95.389

0.729
  recA Latilactobacillus sakei subsp. sakei 23K

69.912

97.695

0.683
  recA Streptococcus pneumoniae Rx1

64.655

100

0.648
  recA Streptococcus pneumoniae R6

64.655

100

0.648
  recA Streptococcus pneumoniae D39

64.655

100

0.648
  recA Streptococcus pneumoniae TIGR4

64.655

100

0.648
  recA Streptococcus mutans UA159

64

100

0.646
  recA Streptococcus pyogenes NZ131

68.085

94.813

0.646
  recA Streptococcus mitis NCTC 12261

65.205

98.559

0.643
  recA Acinetobacter baumannii D1279779

64.08

100

0.643
  recA Acinetobacter baylyi ADP1

63.977

100

0.64
  recA Streptococcus mitis SK321

64.912

98.559

0.64
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.192

97.695

0.637
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.602

97.695

0.631
  recA Helicobacter pylori 26695

63.636

98.271

0.625
  recA Helicobacter pylori strain NCTC11637

63.636

98.271

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.257

95.389

0.622
  recA Vibrio cholerae strain A1552

65.337

93.948

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.948

0.614
  recA Ralstonia pseudosolanacearum GMI1000

65.605

90.49

0.594
  recA Pseudomonas stutzeri DSM 10701

60.714

96.83

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.389

0.582
  recA Glaesserella parasuis strain SC1401

60.372

93.084

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.219

0.559