Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M8332_RS06530 Genome accession   NZ_CP097478
Coordinates   1313148..1314242 (+) Length   364 a.a.
NCBI ID   WP_252780048.1    Uniprot ID   -
Organism   Fructilactobacillus ixorae strain Ru20-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1308148..1319242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8332_RS06500 (M8332_06500) - 1308360..1309550 (+) 1191 WP_252780043.1 thiolase family protein -
  M8332_RS06505 (M8332_06505) - 1309621..1310145 (+) 525 WP_252749483.1 GNAT family N-acetyltransferase -
  M8332_RS06510 (M8332_06510) - 1310158..1310337 (+) 180 WP_252780044.1 hypothetical protein -
  M8332_RS06515 (M8332_06515) - 1310443..1310769 (-) 327 WP_252780045.1 AzlD domain-containing protein -
  M8332_RS06520 (M8332_06520) - 1310756..1311463 (-) 708 WP_252780046.1 AzlC family ABC transporter permease -
  M8332_RS06525 (M8332_06525) - 1311467..1312912 (-) 1446 WP_252780047.1 amino acid permease -
  M8332_RS06530 (M8332_06530) recA 1313148..1314242 (+) 1095 WP_252780048.1 recombinase RecA Machinery gene
  M8332_RS06535 (M8332_06535) - 1314293..1314838 (-) 546 WP_252780049.1 biotin transporter BioY -
  M8332_RS06540 (M8332_06540) - 1315157..1316560 (+) 1404 WP_252780050.1 ABC transporter ATP-binding protein -
  M8332_RS06545 (M8332_06545) - 1316560..1317216 (+) 657 WP_252780051.1 energy-coupling factor transporter transmembrane component T -
  M8332_RS06550 (M8332_06550) - 1317232..1317669 (+) 438 WP_252780052.1 hypothetical protein -
  M8332_RS06555 (M8332_06555) - 1317730..1318101 (-) 372 WP_252780825.1 PaaI family thioesterase -
  M8332_RS06560 (M8332_06560) menB 1318164..1318985 (+) 822 WP_252780054.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38682.91 Da        Isoelectric Point: 4.8988

>NTDB_id=689686 M8332_RS06530 WP_252780048.1 1313148..1314242(+) (recA) [Fructilactobacillus ixorae strain Ru20-1]
MAANSKKSAQDARQAELDKALKQIKKEFGTGAIMRMGETPNSNVEAISTGILSLDIALGIGGFPRGRVVEIFGAESSGKT
TIALQTVAELQKNGGTAAYIDAENAMDPEYAKALGVDIDDLLLSQPGTGEEGLQIADALIGSGAIDLVVVDSVAALVPKS
EIEGDIGDSHVGLQARLMSQALRKLTANINKTKTVVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLRVSGSKQSKE
GQEVVGKETKIKVAKNKVAPPFKTVDTLMSFGHGIEPVADMVNLAVDKDIINKSGSWYSYGEERLGQGLNKTVANLKEKP
ELVAELTHKVRVAYGIEKESDQGTDAEATPSETEPTPTETDLDV

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=689686 M8332_RS06530 WP_252780048.1 1313148..1314242(+) (recA) [Fructilactobacillus ixorae strain Ru20-1]
ATGGCTGCAAATTCAAAAAAGAGCGCACAAGATGCTCGTCAAGCTGAACTTGACAAAGCTTTAAAACAGATCAAAAAAGA
ATTCGGCACCGGAGCCATCATGCGGATGGGTGAAACGCCTAATTCTAACGTGGAGGCCATTTCCACAGGAATTCTCTCCC
TGGATATTGCCCTAGGAATTGGTGGGTTCCCCCGTGGCCGGGTCGTGGAAATTTTTGGAGCTGAATCTTCTGGAAAGACC
ACCATTGCCCTGCAGACCGTGGCCGAATTGCAAAAAAACGGTGGAACTGCTGCCTACATTGATGCCGAAAATGCGATGGA
TCCAGAGTACGCTAAGGCCCTCGGGGTTGACATCGATGACTTATTACTATCCCAACCAGGAACCGGTGAAGAAGGACTGC
AAATTGCAGATGCCCTGATTGGTTCGGGCGCCATTGACCTCGTGGTGGTGGACTCCGTGGCTGCGTTAGTCCCGAAATCC
GAAATTGAAGGAGACATTGGTGATTCCCACGTGGGGCTCCAAGCCCGCTTAATGTCACAAGCCCTGCGGAAATTAACCGC
TAACATCAACAAGACCAAGACCGTCGTGATTTTCATCAACCAACTCCGGGAAAAAGTCGGCGTTATGTTTGGAAATCCGG
AAACCACGCCAGGTGGTCGAGCTCTGAAGTTCTACTCCAGTGTGCGCTTGCGGGTCAGCGGTAGCAAGCAATCCAAGGAA
GGCCAAGAGGTCGTGGGAAAAGAAACCAAGATTAAAGTGGCTAAGAACAAGGTTGCGCCACCATTCAAAACCGTTGATAC
ATTGATGAGTTTCGGACACGGAATCGAACCGGTTGCCGACATGGTGAACCTGGCCGTGGACAAGGATATCATTAACAAAT
CCGGCTCCTGGTATTCCTATGGAGAAGAACGCCTCGGTCAAGGATTGAACAAAACCGTGGCCAACCTCAAGGAAAAACCA
GAACTTGTGGCTGAATTAACGCATAAAGTCCGAGTTGCCTATGGGATTGAAAAAGAATCAGACCAAGGGACTGATGCAGA
GGCCACTCCGAGTGAAACCGAACCAACCCCAACTGAAACAGATTTAGACGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

62.36

97.802

0.61
  recA Streptococcus pneumoniae TIGR4

59.444

98.901

0.588
  recA Streptococcus pneumoniae Rx1

59.444

98.901

0.588
  recA Streptococcus pneumoniae D39

59.444

98.901

0.588
  recA Streptococcus pneumoniae R6

59.444

98.901

0.588
  recA Streptococcus mutans UA159

60.92

95.604

0.582
  recA Streptococcus mitis SK321

63.415

90.11

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.462

91.484

0.571
  recA Streptococcus mitis NCTC 12261

63.11

90.11

0.569
  recA Streptococcus pyogenes NZ131

62.614

90.385

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

89.286

0.555
  recA Neisseria gonorrhoeae MS11

59.509

89.56

0.533
  recA Neisseria gonorrhoeae MS11

59.509

89.56

0.533
  recA Neisseria gonorrhoeae strain FA1090

59.509

89.56

0.533
  recA Acinetobacter baylyi ADP1

55.331

95.33

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

88.462

0.522
  recA Glaesserella parasuis strain SC1401

55.588

93.407

0.519
  recA Acinetobacter baumannii D1279779

58.413

86.538

0.505
  recA Vibrio cholerae strain A1552

57.68

87.637

0.505
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.68

87.637

0.505
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.142

92.857

0.503
  recA Pseudomonas stutzeri DSM 10701

52.89

95.055

0.503
  recA Ralstonia pseudosolanacearum GMI1000

58.466

85.989

0.503
  recA Helicobacter pylori strain NCTC11637

52.326

94.505

0.495
  recA Helicobacter pylori 26695

52.035

94.505

0.492
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.802

93.132

0.492