Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M5524_RS27270 Genome accession   NZ_CP097466
Coordinates   6136256..6137365 (-) Length   369 a.a.
NCBI ID   WP_373989152.1    Uniprot ID   -
Organism   Duganella sp. BuS-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6131256..6142365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5524_RS27250 (M5524_27200) sucD 6131650..6132531 (-) 882 WP_154379791.1 succinate--CoA ligase subunit alpha -
  M5524_RS27255 (M5524_27205) sucC 6132545..6133711 (-) 1167 WP_373989149.1 ADP-forming succinate--CoA ligase subunit beta -
  M5524_RS27260 (M5524_27210) - 6134183..6135805 (-) 1623 WP_373989150.1 phosphoethanolamine transferase -
  M5524_RS27265 (M5524_27215) recX 6135795..6136247 (-) 453 WP_373989151.1 recombination regulator RecX -
  M5524_RS27270 (M5524_27220) recA 6136256..6137365 (-) 1110 WP_373989152.1 recombinase RecA Machinery gene
  M5524_RS27275 (M5524_27225) - 6137518..6138228 (+) 711 WP_373989153.1 response regulator -
  M5524_RS27280 (M5524_27230) - 6138225..6139739 (+) 1515 WP_373989154.1 sensor histidine kinase N-terminal domain-containing protein -
  M5524_RS27285 (M5524_27235) - 6139732..6139974 (+) 243 WP_373989155.1 DUF4212 domain-containing protein -
  M5524_RS27290 (M5524_27240) - 6139971..6142034 (+) 2064 WP_373989156.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39408.14 Da        Isoelectric Point: 5.9044

>NTDB_id=689590 M5524_RS27270 WP_373989152.1 6136256..6137365(-) (recA) [Duganella sp. BuS-21]
MDDKKGVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDMVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGVEAKIVEKSGSWYSYNGERVGQGKDNARLFLQER
PELAWEIENKVRESLGVRTLPPLANSTVVKLKSVDKADKADKADKADAA

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=689590 M5524_RS27270 WP_373989152.1 6136256..6137365(-) (recA) [Duganella sp. BuS-21]
ATGGACGATAAAAAAGGCGTAGTACCTGCATCTGAAAAAGCCAAGGCGCTGGCAGCGGCGCTGGCCCAGATCGAGAAGCA
ATTCGGTAAAGGCTCCGTCATGCGCATGGACGCCAGTGCTCCTATCGAAGAAGTGCAGGTCGTGTCGACCGGCTCGCTGG
GTTTGGACGTGGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCTGAATCGTCGGGCAAA
ACCACGCTGACCCTGCAAACCATCGCGGAAATGCAGAAACTGGGCGGCACCTGCGCCTTTATCGACGCCGAGCACGCGCT
GGACGTCGGCTATGCGCAGAAACTGGGTGTCAACCTGCACGAACTGCTGATCTCGCAGCCGGACACCGGCGAACAAGCGC
TGGAAATCTGCGACGCGCTGGTGCGTTCCGGTTCCGTCGACATGGTGGTGATCGACTCGGTCGCCGCACTGACCCCGCGT
GCCGAGATCGAAGGCGACATGGGCGATTCCCTGCCGGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGAC
CGGCTCGATCAACCGCACCAATACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGTTCGC
CGGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGATATCCGCCGCACCGGCTCGATCAAA
TCGGGCGACGAGGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATTGCACCACCGTTCAAGGAAGCGCA
CTTCGACATCCTGTATGGCGCCGGCACCTCGCGCGAAGGCGAGATCCTGGATCTGGGTGTGGAAGCGAAGATCGTCGAGA
AATCGGGCTCGTGGTATAGCTACAACGGCGAACGCGTCGGCCAAGGCAAGGACAACGCCCGCCTCTTCTTGCAGGAACGC
CCGGAACTGGCGTGGGAAATCGAAAACAAGGTGCGCGAATCGCTGGGCGTGCGCACGCTGCCGCCGCTGGCCAACAGCAC
GGTCGTCAAGCTGAAGTCGGTCGACAAGGCTGATAAGGCCGACAAGGCCGACAAGGCCGACGCCGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.226

91.057

0.767
  recA Neisseria gonorrhoeae MS11

73.171

88.889

0.65
  recA Neisseria gonorrhoeae MS11

73.171

88.889

0.65
  recA Neisseria gonorrhoeae strain FA1090

73.171

88.889

0.65
  recA Glaesserella parasuis strain SC1401

65.819

95.935

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

87.534

0.626
  recA Vibrio cholerae strain A1552

71.517

87.534

0.626
  recA Pseudomonas stutzeri DSM 10701

70.588

87.534

0.618
  recA Acinetobacter baylyi ADP1

70.279

87.534

0.615
  recA Acinetobacter baumannii D1279779

69.969

87.534

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

90.244

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

88.618

0.577
  recA Streptococcus mutans UA159

59.49

95.664

0.569
  recA Helicobacter pylori 26695

63.804

88.347

0.564
  recA Helicobacter pylori strain NCTC11637

63.497

88.347

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.614

89.16

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.431

0.558
  recA Streptococcus mitis NCTC 12261

58.074

95.664

0.556
  recA Streptococcus pyogenes NZ131

61.702

89.16

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

87.534

0.55
  recA Lactococcus lactis subsp. cremoris KW2

61.027

89.702

0.547
  recA Streptococcus pneumoniae Rx1

61.027

89.702

0.547
  recA Streptococcus pneumoniae D39

61.027

89.702

0.547
  recA Streptococcus pneumoniae R6

61.027

89.702

0.547
  recA Streptococcus pneumoniae TIGR4

61.027

89.702

0.547
  recA Streptococcus mitis SK321

60.725

89.702

0.545