Detailed information NTG0068940

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: UtA1_RS08560
• Genome accession: NZ_AP018335
• Coordinates: 1780439..1781500 (+)
• Length: 353 a.a.
• NCBI ID: WP_016836828.1
• Uniprot ID: A0A840PHB5
• Organism: Ureibacillus thermosphaericus strain A1
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1781927..1786598	1780439..1781500	flank	427

Gene organization within MGE regions

Location: 1780439..1786598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UtA1_RS08560	recA	1780439..1781500 (+)	1062	WP_016836828.1	recombinase RecA	Machinery gene
UtA1_RS08565	-	1781927..1783042 (+)	1116	WP_096549683.1	IS4 family transposase	-
UtA1_RS08570	rny	1783438..1784991 (+)	1554	WP_016836829.1	ribonuclease Y	-
UtA1_RS08575	-	1785478..1786598 (-)	1121	Protein_1709	IS4 family transposase	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 38338.70 Da
• Isoelectric Point: 4.6734

>NTDB_id=68940 UtA1_RS08560 WP_016836828.1 1780439..1781500(+) (recA) [Ureibacillus thermosphaericus strain A1]
MSDRKAALDMALKQIEKQFGKGSIMKLGEKTDLQISTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPIYAQKLGVNIDELILSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTICIFINQVRDKIGVMFGNPETTPGGRALKFYSSIRLEVRRAETIKQGSEMVGSKT
KIKVVKNKVAPPFRTAEVDIMFGEGISKEGEIVDIGAELDIIQKSGSWYSYNDERIGQGRENVKQFLKANPEIRDEIAQK
IRESFGMTSNSYMIAAHDDDEELAEELPLFDEE

Nucleotide

• Length: 1062 bp

>NTDB_id=68940 UtA1_RS08560 WP_016836828.1 1780439..1781500(+) (recA) [Ureibacillus thermosphaericus strain A1]
TTGAGTGATCGTAAAGCCGCCTTAGATATGGCGTTAAAACAAATTGAAAAGCAATTCGGTAAAGGCTCCATTATGAAACT
CGGTGAAAAAACGGATTTGCAAATTTCGACTGTGCCAAGTGGTTCACTAGCTCTTGATGCAGCCCTTGGTGTAGGGGGAT
ATCCGAGAGGACGTATTATTGAAATTTATGGTCCAGAGTCATCCGGTAAAACTACAGTGGCATTACATGCAATTGCGGAA
GTTCAGGCACAAGGTGGACAAGCGGCATTTATTGATGCAGAACACGCATTAGACCCAATTTACGCTCAAAAATTAGGCGT
TAATATCGATGAATTAATTCTTTCCCAACCTGATACTGGAGAGCAAGCGTTGGAAATTGCTGAGGCATTAGTGCGAAGCG
GTGCAATTGATATTATTGTCATCGACTCTGTAGCGGCATTAGTGCCAAAAGCGGAGATTGAAGGAGAAATGGGCGACTCA
CACATGGGGTTACAAGCTCGCCTAATGTCTCAAGCTTTACGAAAATTATCTGGGGTCATCAATAAATCAAATACAATCTG
CATTTTCATTAACCAAGTTCGTGATAAAATCGGCGTCATGTTTGGCAATCCAGAAACGACACCTGGTGGCCGTGCTTTAA
AATTCTATTCTTCCATCCGTTTAGAAGTTCGCCGTGCGGAAACAATTAAACAAGGTAGCGAAATGGTAGGAAGTAAAACA
AAAATTAAAGTAGTGAAAAATAAAGTAGCTCCACCATTCCGCACTGCAGAAGTGGATATTATGTTCGGTGAAGGAATTTC
GAAAGAAGGCGAAATTGTCGATATTGGTGCAGAGCTAGACATTATTCAGAAGAGCGGTTCCTGGTATTCATACAACGATG
AGAGAATTGGACAAGGTCGAGAAAACGTGAAACAATTCTTGAAAGCAAATCCAGAAATTCGCGATGAAATTGCACAAAAA
ATTCGTGAATCCTTTGGCATGACATCGAATTCCTACATGATTGCAGCTCATGACGATGACGAAGAGCTCGCAGAAGAATT
ACCGTTATTTGATGAAGAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A840PHB5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Bacillus subtilis subsp. subtilis str. 168	84.242	93.484	0.788
recA	Latilactobacillus sakei subsp. sakei 23K	73.926	92.351	0.683
recA	Streptococcus mitis NCTC 12261	65.805	98.584	0.649
recA	Streptococcus pyogenes NZ131	64.306	100	0.643
recA	Streptococcus pneumoniae Rx1	67.576	93.484	0.632
recA	Streptococcus pneumoniae D39	67.576	93.484	0.632
recA	Streptococcus pneumoniae R6	67.576	93.484	0.632
recA	Streptococcus pneumoniae TIGR4	67.576	93.484	0.632
recA	Streptococcus mitis SK321	67.273	93.484	0.629
recA	Streptococcus mutans UA159	67.477	93.201	0.629
recA	Lactococcus lactis subsp. cremoris KW2	65.868	94.618	0.623
recA	Neisseria gonorrhoeae MS11	67.593	91.785	0.62
recA	Neisseria gonorrhoeae MS11	67.593	91.785	0.62
recA	Neisseria gonorrhoeae strain FA1090	67.593	91.785	0.62
recA	Glaesserella parasuis strain SC1401	61.932	99.717	0.618
recA	Acinetobacter baylyi ADP1	63.265	97.167	0.615
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.529	96.317	0.612
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.046	93.201	0.606
recA	Ralstonia pseudosolanacearum GMI1000	64.939	92.918	0.603
recA	Vibrio cholerae strain A1552	62.099	97.167	0.603
recA	Vibrio cholerae O1 biovar El Tor strain E7946	62.099	97.167	0.603
recA	Acinetobacter baumannii D1279779	61.652	96.034	0.592
recA	Helicobacter pylori 26695	63.077	92.068	0.581
recA	Helicobacter pylori strain NCTC11637	63.077	92.068	0.581
recA	Pseudomonas stutzeri DSM 10701	62.08	92.635	0.575
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.25	90.652	0.555