Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M5595_RS02620 Genome accession   NZ_CP097376
Coordinates   554897..556057 (+) Length   386 a.a.
NCBI ID   WP_038352430.1    Uniprot ID   -
Organism   Eubacterium limosum strain B2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 549897..561057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5595_RS02600 (M5595_02600) rimO 550436..551776 (+) 1341 WP_038352427.1 30S ribosomal protein S12 methylthiotransferase RimO -
  M5595_RS02605 (M5595_02605) pgsA 551763..552308 (+) 546 WP_013380371.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M5595_RS02610 (M5595_02610) - 552381..553391 (+) 1011 WP_038352428.1 nucleoid-associated protein -
  M5595_RS02615 (M5595_02615) - 553585..554826 (+) 1242 WP_038352429.1 competence/damage-inducible protein A -
  M5595_RS02620 (M5595_02620) recA 554897..556057 (+) 1161 WP_038352430.1 recombinase RecA Machinery gene
  M5595_RS02625 (M5595_02625) - 556071..556262 (+) 192 WP_038352431.1 hypothetical protein -
  M5595_RS02630 (M5595_02630) dinB 556383..557615 (+) 1233 WP_038352432.1 DNA polymerase IV -
  M5595_RS02635 (M5595_02635) - 557668..558390 (-) 723 WP_038352468.1 MIP/aquaporin family protein -
  M5595_RS02640 (M5595_02640) - 558685..560235 (-) 1551 WP_038352433.1 flotillin family protein -
  M5595_RS02645 (M5595_02645) - 560268..560504 (-) 237 WP_038352434.1 hypothetical protein -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 42090.79 Da        Isoelectric Point: 4.5949

>NTDB_id=689293 M5595_RS02620 WP_038352430.1 554897..556057(+) (recA) [Eubacterium limosum strain B2]
MAEKRKPLEKVEEKTDNSAKQEALNAALKNIEKTFGKGAVMRLGDESAKMDVDVISTSSIGIDMALGIGGVPRGRIIEIY
GPESSGKTTIALHIVAEAQKAGGNAAFIDAEHALDPVYAKALGVDVDNLIVSQPDTGEQALEILEALVRSGAIDVAVVDS
VAALVPRAEIDGEMGDSHVGLQARLMSQALRKLAGIIKKSNTAAIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDI
RRIETLKKGTDMIGNRTRAKIVKNKMAPPFKTAEFDIMYGEGISREGDILDIAVELNIIKKAGSWFSYGEERLGQGRDKV
KEYLKENPEFADAVEQKIRDHFAKKDEPEAPEEGSEALAKDQAEMAAELSDEDMDEFFELNEFEEE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=689293 M5595_RS02620 WP_038352430.1 554897..556057(+) (recA) [Eubacterium limosum strain B2]
ATGGCTGAAAAACGCAAACCATTAGAAAAAGTAGAAGAAAAAACTGACAACAGCGCAAAGCAGGAAGCCTTAAACGCTGC
TTTAAAGAATATTGAAAAAACTTTTGGAAAGGGAGCTGTCATGCGTCTTGGAGACGAGAGTGCGAAGATGGACGTTGACG
TTATCTCCACCTCATCCATCGGTATTGATATGGCGCTTGGAATTGGCGGGGTTCCCCGTGGCCGGATCATTGAGATCTAC
GGACCAGAATCCTCCGGTAAAACCACTATTGCCCTTCATATTGTGGCGGAAGCCCAAAAGGCCGGAGGCAACGCGGCCTT
TATCGATGCCGAACATGCGCTCGATCCCGTATACGCAAAAGCCCTCGGTGTGGATGTGGATAACCTGATTGTATCCCAGC
CGGACACAGGTGAGCAGGCGCTTGAAATTCTTGAAGCCCTGGTGCGGAGCGGGGCCATCGATGTGGCCGTTGTGGACTCT
GTCGCGGCTCTGGTACCCCGTGCGGAAATTGATGGGGAAATGGGGGACTCCCATGTTGGGCTTCAGGCGAGACTGATGTC
CCAGGCCCTCCGAAAGCTGGCAGGGATTATCAAAAAGTCCAATACCGCGGCGATCTTTATTAACCAGCTGCGCGAGAAGG
TTGGGGTTATGTACGGAAATCCAGAGGTTACAACTGGCGGCCGTGCTTTGAAATTCTATTCCTCTGTCCGGATGGATATC
CGCAGAATTGAAACTTTGAAAAAAGGAACCGATATGATCGGGAACCGTACCCGTGCTAAGATTGTCAAGAACAAAATGGC
GCCACCGTTTAAAACTGCCGAGTTTGATATCATGTACGGCGAGGGTATCTCCAGAGAAGGGGATATTTTGGACATAGCGG
TTGAGCTGAATATTATTAAAAAGGCCGGCTCATGGTTTTCCTACGGCGAGGAACGCCTGGGACAGGGACGAGACAAGGTG
AAGGAATACCTTAAAGAAAACCCGGAATTTGCCGATGCGGTTGAGCAGAAAATCCGTGATCATTTTGCAAAGAAGGATGA
GCCCGAAGCGCCTGAGGAAGGTTCGGAAGCTCTTGCCAAGGATCAGGCTGAAATGGCCGCGGAATTATCTGATGAGGATA
TGGATGAGTTTTTTGAGCTGAATGAGTTCGAGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

58.839

98.187

0.578
  recA Streptococcus mitis NCTC 12261

58.839

98.187

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

67.273

85.492

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

67.485

84.456

0.57
  recA Streptococcus pneumoniae TIGR4

61.111

93.264

0.57
  recA Streptococcus pneumoniae Rx1

61.111

93.264

0.57
  recA Streptococcus pneumoniae D39

61.111

93.264

0.57
  recA Streptococcus pneumoniae R6

61.111

93.264

0.57
  recA Streptococcus mutans UA159

60.833

93.264

0.567
  recA Streptococcus pyogenes NZ131

62.717

89.637

0.562
  recA Helicobacter pylori strain NCTC11637

63.717

87.824

0.56
  recA Helicobacter pylori 26695

63.717

87.824

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.808

88.86

0.549
  recA Glaesserella parasuis strain SC1401

56.383

97.409

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.174

86.528

0.547
  recA Lactococcus lactis subsp. cremoris KW2

59.773

91.451

0.547
  recA Acinetobacter baylyi ADP1

61.224

88.86

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

84.197

0.541
  recA Vibrio cholerae strain A1552

60.651

87.565

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.651

87.565

0.531
  recA Neisseria gonorrhoeae MS11

65.372

80.052

0.523
  recA Neisseria gonorrhoeae MS11

65.372

80.052

0.523
  recA Neisseria gonorrhoeae strain FA1090

65.372

80.052

0.523
  recA Acinetobacter baumannii D1279779

62.229

83.679

0.521
  recA Ralstonia pseudosolanacearum GMI1000

63.578

81.088

0.516
  recA Pseudomonas stutzeri DSM 10701

62.187

82.902

0.516