Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDC37_RS18915 Genome accession   NZ_AP018254
Coordinates   4697523..4698611 (-) Length   362 a.a.
NCBI ID   WP_096624095.1    Uniprot ID   A0A1Z4NND6
Organism   Calothrix sp. NIES-3974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4692523..4703611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDC37_RS18895 (NIES3974_38600) speA 4692576..4694621 (+) 2046 WP_096624087.1 biosynthetic arginine decarboxylase -
  CDC37_RS18900 (NIES3974_38610) - 4694689..4695669 (-) 981 WP_096624089.1 ATP-binding cassette domain-containing protein -
  CDC37_RS18905 (NIES3974_38620) - 4695908..4696561 (+) 654 WP_096624091.1 hypothetical protein -
  CDC37_RS18910 (NIES3974_38630) - 4696632..4697045 (-) 414 WP_096624093.1 Hsp20/alpha crystallin family protein -
  CDC37_RS18915 (NIES3974_38640) recA 4697523..4698611 (-) 1089 WP_096624095.1 recombinase RecA Machinery gene
  CDC37_RS18920 (NIES3974_38650) xseA 4699151..4700365 (+) 1215 WP_096624097.1 exodeoxyribonuclease VII large subunit -
  CDC37_RS18925 (NIES3974_38660) - 4700552..4701322 (-) 771 WP_096624099.1 circadian clock KaiB family protein -
  CDC37_RS18930 (NIES3974_38670) - 4701421..4702725 (-) 1305 WP_096624101.1 type IV pilus twitching motility protein PilT -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39153.53 Da        Isoelectric Point: 4.7223

>NTDB_id=68920 CDC37_RS18915 WP_096624095.1 4697523..4698611(-) (recA) [Calothrix sp. NIES-3974]
MAVNTTDNAGRQKALNMVLNQIEKTFGKGTIMRLGDATRMKVETISSGALTLDLALGGGIPKGRVVEIYGPESSAKTTVA
LHAIAEVQRNGGIAAFVDAEHALDPTYAAAIGVDTDNLLVSQPDTGEAALEIVDQLVRSAAVDLVVIDSVAALVPRAEIE
GEMGDSHVGLQARLMSQALRKITGNIGKSGCTVLFINQLRQKIGVSYGNPETTTGGQALKYYASVRLDIRRIQTLKKGTE
EFGIRVKVKVAKNKVAPPFRIAEFDVIFGKGISTLGCIVDLAEETNILTRKGAWYSYNGENISQGRDNAIKYLEERPELI
EEIKVKVREKLDLGAVVSANSVNRSMEDEEEDEDMDDFIDEE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=68920 CDC37_RS18915 WP_096624095.1 4697523..4698611(-) (recA) [Calothrix sp. NIES-3974]
ATGGCTGTAAATACCACAGATAACGCAGGAAGGCAAAAAGCGCTGAACATGGTACTCAACCAAATCGAGAAGACCTTTGG
TAAGGGTACAATCATGCGGTTAGGTGATGCTACCCGGATGAAGGTGGAAACAATATCCAGTGGTGCGTTAACATTAGATT
TAGCTTTGGGTGGAGGAATTCCCAAGGGTCGGGTTGTGGAGATTTATGGGCCGGAAAGTTCGGCCAAAACAACGGTGGCT
CTCCATGCGATCGCGGAAGTTCAAAGAAATGGTGGAATTGCTGCGTTTGTTGATGCGGAACACGCTCTAGACCCCACCTA
TGCGGCTGCCATCGGTGTGGATACAGATAATTTGCTGGTATCCCAACCAGATACGGGAGAAGCGGCTTTAGAAATCGTTG
ACCAATTAGTTCGGTCAGCGGCGGTGGATTTGGTAGTGATTGACTCCGTGGCTGCCCTTGTACCCCGTGCAGAGATTGAA
GGGGAAATGGGTGATTCCCACGTGGGTTTGCAGGCTCGTTTGATGAGTCAGGCGCTACGTAAAATTACTGGTAACATTGG
TAAATCTGGTTGCACTGTGTTGTTTATTAACCAGTTGCGGCAAAAAATAGGTGTTAGTTATGGTAATCCGGAGACCACCA
CTGGTGGACAAGCGTTAAAGTATTATGCTTCGGTGCGTTTGGATATTCGACGCATTCAAACATTGAAAAAGGGAACCGAG
GAATTTGGAATTCGCGTGAAGGTGAAGGTGGCAAAAAACAAAGTAGCACCACCCTTTCGGATTGCAGAGTTTGACGTGAT
TTTTGGTAAGGGTATTTCTACCCTGGGATGTATCGTTGACTTGGCGGAAGAGACGAATATTTTGACCCGTAAGGGTGCTT
GGTATAGTTACAACGGTGAGAATATTTCCCAAGGACGGGATAATGCGATTAAGTATTTGGAAGAACGTCCAGAGTTGATT
GAAGAAATCAAAGTCAAGGTACGGGAAAAACTGGATTTAGGTGCGGTTGTGTCCGCGAATTCGGTTAATCGAAGTATGGA
GGATGAAGAGGAGGATGAGGATATGGATGATTTTATCGATGAAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z4NND6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.717

95.58

0.599
  recA Acinetobacter baumannii D1279779

62.573

94.475

0.591
  recA Pseudomonas stutzeri DSM 10701

61.272

95.58

0.586
  recA Ralstonia pseudosolanacearum GMI1000

64

89.779

0.575
  recA Streptococcus mutans UA159

58.074

97.514

0.566
  recA Streptococcus mitis NCTC 12261

58.213

95.856

0.558
  recA Glaesserella parasuis strain SC1401

56.78

97.79

0.555
  recA Streptococcus pneumoniae TIGR4

60.725

91.436

0.555
  recA Streptococcus pneumoniae R6

60.725

91.436

0.555
  recA Streptococcus pneumoniae D39

60.725

91.436

0.555
  recA Streptococcus pneumoniae Rx1

60.725

91.436

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

61.728

89.503

0.552
  recA Streptococcus mitis SK321

60.121

91.436

0.55
  recA Neisseria gonorrhoeae strain FA1090

61.875

88.398

0.547
  recA Neisseria gonorrhoeae MS11

61.875

88.398

0.547
  recA Neisseria gonorrhoeae MS11

61.875

88.398

0.547
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.391

95.304

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.806

92.541

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

88.122

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.87

88.95

0.541
  recA Vibrio cholerae strain A1552

60.87

88.95

0.541
  recA Helicobacter pylori strain NCTC11637

60.681

89.227

0.541
  recA Helicobacter pylori 26695

60.681

89.227

0.541
  recA Streptococcus pyogenes NZ131

59.816

90.055

0.539
  recA Lactococcus lactis subsp. cremoris KW2

59.692

89.779

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

89.503

0.525

Multiple sequence alignment