Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Vir3643_RS09440 Genome accession   NZ_CP097347
Coordinates   1816289..1817350 (+) Length   353 a.a.
NCBI ID   WP_373896075.1    Uniprot ID   -
Organism   Virgibacillus sp. CBA3643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1811289..1822350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vir3643_RS09415 (Vir3643_09365) - 1812054..1812314 (+) 261 WP_373896070.1 DUF3243 domain-containing protein -
  Vir3643_RS09420 (Vir3643_09370) - 1812487..1813281 (+) 795 WP_373896071.1 YmfK family protein -
  Vir3643_RS09425 (Vir3643_09375) - 1813299..1814210 (+) 912 WP_373896072.1 helix-turn-helix domain-containing protein -
  Vir3643_RS09430 (Vir3643_09380) pgsA 1814291..1814869 (+) 579 WP_373896073.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Vir3643_RS09435 (Vir3643_09385) - 1814869..1816113 (+) 1245 WP_373896074.1 competence/damage-inducible protein A -
  Vir3643_RS09440 (Vir3643_09390) recA 1816289..1817350 (+) 1062 WP_373896075.1 recombinase RecA Machinery gene
  Vir3643_RS09445 (Vir3643_09395) - 1817575..1818984 (+) 1410 WP_373895563.1 ISLre2 family transposase -
  Vir3643_RS09450 (Vir3643_09400) rny 1819308..1820873 (+) 1566 WP_373896076.1 ribonuclease Y -
  Vir3643_RS09455 (Vir3643_09405) - 1821058..1821855 (+) 798 WP_373896077.1 TIGR00282 family metallophosphoesterase -
  Vir3643_RS09460 (Vir3643_09410) - 1821961..1822221 (+) 261 WP_373896078.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38514.68 Da        Isoelectric Point: 5.2179

>NTDB_id=688845 Vir3643_RS09440 WP_373896075.1 1816289..1817350(+) (recA) [Virgibacillus sp. CBA3643]
MSDKKQALDMALKQIEKQFGKGSIMKMGDQAAQKIATIPSGSLALDVALGIGGYPRGRVVEVYGPESSGKTTVALHAIAE
AQKKGGQAAFIDAEHALDPTYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGVINKSHTTAVFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEIMGNKA
RIKVVKNKVAPPFKQAEVDIMYGQGISKEGEILDIGSELDIVQKSGAWYSYNGERLGQGRENSKQFFKENQDMMAEVHEA
IRKHYNLDGTEDKQEEKQETNEQQEEQESMDIK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=688845 Vir3643_RS09440 WP_373896075.1 1816289..1817350(+) (recA) [Virgibacillus sp. CBA3643]
GTGAGTGATAAAAAACAGGCATTAGATATGGCGTTAAAACAAATAGAAAAACAATTTGGCAAAGGATCAATTATGAAAAT
GGGGGACCAGGCTGCACAAAAAATAGCAACCATTCCAAGTGGGTCACTAGCATTGGATGTAGCACTAGGAATAGGTGGAT
ATCCCCGAGGTAGAGTAGTAGAAGTATATGGCCCTGAATCATCAGGTAAGACGACGGTAGCTTTACATGCTATTGCAGAA
GCACAGAAAAAAGGTGGACAAGCAGCTTTTATTGATGCTGAGCATGCGCTTGATCCGACATATGCAAGAGCATTGGGTGT
AGATATTGAAGAACTGCTTTTATCACAACCCGATACAGGTGAACAAGCATTGGAAATTGCTGAAGCACTTGTTCGAAGTG
GCGCAGTTGATATCGTTGTTGTGGACTCTGTTGCGGCATTAGTTCCTAAAGCGGAAATTGAAGGAGATATGGGAGATTCG
CATGTGGGCTTGCAGGCACGTCTTATGTCCCAAGCACTAAGAAAGCTATCAGGGGTAATTAATAAATCCCATACGACAGC
TGTATTCATCAATCAGATTCGCGAAAAAATAGGTGTCATGTTTGGGAATCCGGAGACAACTCCGGGTGGACGCGCACTTA
AATTCTATTCATCTGTTCGTTTGGAAGTTCGTCGTGCGGAAACATTAAAACAGGGCAATGAAATTATGGGTAATAAGGCT
AGAATTAAAGTCGTTAAAAATAAAGTAGCACCACCATTTAAGCAAGCGGAAGTGGATATAATGTATGGTCAGGGAATTTC
AAAAGAAGGTGAAATTCTTGATATTGGTTCAGAGCTGGATATTGTCCAAAAAAGTGGTGCGTGGTATTCATATAATGGAG
AGAGACTGGGTCAAGGCCGGGAAAATTCCAAACAATTCTTTAAAGAGAATCAGGATATGATGGCCGAGGTCCATGAAGCA
ATCCGTAAACATTATAATTTAGATGGTACAGAAGATAAGCAAGAAGAAAAACAAGAAACCAATGAACAACAAGAAGAACA
GGAAAGTATGGATATAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.146

92.918

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

70.262

97.167

0.683
  recA Streptococcus mutans UA159

64.246

100

0.652
  recA Streptococcus mitis SK321

65.407

97.45

0.637
  recA Streptococcus mitis NCTC 12261

65.306

97.167

0.635
  recA Streptococcus pneumoniae R6

62.817

100

0.632
  recA Streptococcus pneumoniae Rx1

62.817

100

0.632
  recA Streptococcus pneumoniae D39

62.817

100

0.632
  recA Streptococcus pneumoniae TIGR4

62.817

100

0.632
  recA Neisseria gonorrhoeae MS11

66.97

93.484

0.626
  recA Neisseria gonorrhoeae MS11

66.97

93.484

0.626
  recA Neisseria gonorrhoeae strain FA1090

66.97

93.484

0.626
  recA Streptococcus pyogenes NZ131

66.361

92.635

0.615
  recA Lactococcus lactis subsp. cremoris KW2

64.478

94.901

0.612
  recA Ralstonia pseudosolanacearum GMI1000

62.908

95.467

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

92.918

0.592
  recA Helicobacter pylori 26695

64.798

90.935

0.589
  recA Helicobacter pylori strain NCTC11637

64.798

90.935

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.351

0.589
  recA Acinetobacter baylyi ADP1

59.366

98.3

0.584
  recA Glaesserella parasuis strain SC1401

63.95

90.368

0.578
  recA Vibrio cholerae strain A1552

63.551

90.935

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

90.935

0.578
  recA Acinetobacter baumannii D1279779

61.89

92.918

0.575
  recA Pseudomonas stutzeri DSM 10701

63.125

90.652

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

90.652

0.538